RNA id: AMCG00014494


Basic Information

Item Value
RNA id AMCG00014494
length 2133
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00014494
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15715800 ~ 15725440 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCATACTGAGTAAACAGTGAATATGCTTTCAGAAACAGCGATAAAACGACATAGTTTGCGCCACGGAAGAGGCGTCGTTTTCGATGTGTATGATGTGAAATAAAAGCGTGTGTTGCAGGTCTCGGTGCAGCTCCGATGGCAGACGGCTGATGTCTGACACTATGCGGCACCACTGGCTGCTCCTGGGAGCTTGTGGATGGGTGCTGTTGATACTGATGTTTGCCAGCAAGTTCATCAATTTCAACTTAAGGGTTCCGGATGACTACGGAGGCAAGTCAGAACCGCTTAGCTGGACTGTGACGGCAACCAAGTTAATCAAGTCACTAGCACGAGAGTTGGAGAAGAGTGAGCCACAACCTGCACATCAGCTCCCCGAAGGCACCGTGGCGGTTAACGGAGAAGACTGGCAGGCTGTGGAGAGTGAGCGTCTGGAGCTGGTATCCAGCGTGTGCAGAAACGGCTCGCTGAAGAACCTCACACACACGCCAATTGGCAAGTTTGTCCTCGACAGGATCTTCGTGTGTGACAAGCACAAGATCCTCTTCTGCCAGACTCCAAAGGTCGGCAACACACAGTGGAAGAAGGAGCTTTCTCCACCGTCGAGGAAATACCAGAGAATgtTAAACACGTATTTCAAATTCTTCATTGTGAGAGACCCATTTGAGAGGCTCATTTCTGCCTTCAAGGACAAGTTTCTTCAGAACCCCAGGTTTGAGCCCTGGTATAAACATGACATAGCTCCGGCCATCATCCGCAAATACAGAAAGAACCACATGGAAACCACGGGGCTGCGCTTCGAAGACTTCATCCGTTATCTAGGCGACCCCAACCACAAGAGAGTGGACCGGCAATTCGGAGACCACATAATTCACTGGGTCACCTACGTGGAGCTGTGCGCGCCCTGTGACATAAAGTACAACGTTATTGGGCACCACGAAAGTCTGGAACGTGACGctccttacattttaaaagctgctgGCATAGACCATTTAGTTTCCTATCCTACCATCCCACCAGGGATCACTTCGTACAATAGGACAAAGGTGGAACAGTACTTCTCTGGAATAAGCAAAAGAGACATCCGCCGTCTGTATGCACGCTTTCATGGTGACTTTAGGCTTTTTGGCTACAAGGAACctgattttttattaaactaacCACCTAAattagatttcttttttttttttttttaagaactgtatgtttaaatatagtatatatatatatatatatattaaatccaAACAACAGGGGTCTAATGTTTGCCTGACTAGAACTGCATGCCATTATAAACTGTTAAacgaagaaaaacaaaatttctTTGTGGACCCTCTTACCGAAgtatagaaattaaaattaaaactagaTTATCATTCACACCTAGATCTTCATGCTAGTTAATAAAGGAATTTGGATGTTCTGATGCCCCTGTATTCAAGTTGTTGGGGAAGAAGCATGCAAATggtcagacatttctttcaGTACATAGCCTTTGCCTCAAAACATGGTCAGAACtgttattgatattttaatgcaATTGTGTATTACTGGTGGCCACAATACATTGTCAGTCAGCTAATCATGTGCTGAAGATTTGTATATCACTCATTGTGTGACACTCCAAGagaaacacatgcactcccTTCATAATCTGTTGATGTATACAGGCCTTCatatataaatcattcaaaCTTCTTGTTTGATTGAGTGCTCTTCACACAATAATTGCCTTAGAGCACTTTACAGGATGAATGTGTACATGAAGTAGAGTAGATAAACCGTTAGGcatagaggagagaaaaacaaaaactaaataaatatattgggGTCTAAGGTCCCCCTCCAGTCAAGCAAGAGTTGAAGAATATGGGTGGATCGAATTCTAGACGTATATATTCAGAGGAAATGGAGGAGTGTAATGGATtcacaacttattttttttctccagcatGAGACTGAGGCTGGGAGATTGTACCCCGGACAGACCAGCACTAACAAAACTCTTTTGTATCTCGAAACAGATGTTCTTctgttatgaaaatgtaaaagattgTAATAAACTGTCTGGCTTAAAATCATGGAATTTTCCTCACAAGGAtccatatacagtactgtgcaaatgttttaggcag

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K09674 CHST10; carbohydrate 3-sulfotransferase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87982 lncRNA upstream 190785 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 209752 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 214968 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 264532 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 284948 15350642 ~ 15430852 (+) True G70378
TU88084 lncRNA downstream 1994 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 192973 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 511670 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 764971 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1005438 16730878 ~ 16733637 (+) True G70776
AMCG00014496 mRNA upstream 12341 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014490 mRNA upstream 29901 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014487 mRNA upstream 44652 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014489 mRNA upstream 60955 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014488 mRNA upstream 98635 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014495 mRNA downstream 10205 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014501 mRNA downstream 55149 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014500 mRNA downstream 97836 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014503 mRNA downstream 149143 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014505 mRNA downstream 159823 15885263 ~ 15903047 (+) True AMCG00014505
TU88057 other upstream 36012 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 36012 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1358932 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5707152 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8299206 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 404085 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 740241 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1678071 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2546414 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 7129902 22855342 ~ 22855646 (+) True G71525

Expression Profile