RNA id: AMCG00014495


Basic Information

Item Value
RNA id AMCG00014495
length 5861
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00014495
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15735645 ~ 15749118 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCTGCGCTGTTACACAGTCCGGGTCTGGGTGCTTTCAGAGGATGTCCTACAATACAACGACATGCAATATgaagacaaaacacacagatttaCAACTACACAAGTGCGTGTAAACCAACTTGTGTGACGGGATCTGGGCCAGCTCAGAGGAAACGGCCGACACCGGGACCAGGCTTCAACAGGGCTCGGCGGCGGGGACGTGTTGGACTGGGCTACGTGATCAGATGCAGATTGAGTAACTTGTTATACAAAAGGTGGTGAACTGGAACTGACGTCGgctcatttttatgtttgtttcaaaGTGACATTTTTAGACGGAGGAATTGGGCTCGGGGTCGTCTGGGAAGTGAACATCACTCCAGCtcattgtttttcactttttggtTCAGACCTGTGAGGTAACAATGCGAATGAATAAGGTCATTTTTTGTAAcgacatttaaaacatgtattattcatactactaataatatttttaaagaattacaTCCTCGACTTATCGCTAGTACACCGGCCTGGCTGCGGGGGACGTGCTCCGGCAGGGCTGCGGGCGGGCGACGCGCTGAGACCTGCGACATAGGGACACTTGCGCCCGGCGCTCCGGCTGCTGCTTCTCCTCACGGCAGTCCCTCGGCTTTATTCCCTTCATTGTCCATTGAACATGGCTACGAAAAGTCAGTCCATACAAGTACATAATATAGACGATTTACGAACTGTCGCCGAAGGACTTTCCTAGTTATACAAGTAGTATATGTAACCCCATTCTCTCTGGGATGAGGCCTACTTCAAACTGCTGGCATCGTCCCATTCCGGTTTTTGGAGAAGGGACATTCCAGTAGTTCACAGGACTCCTACAACCGTCGTCAGTTGTATAACTTTTTGTACTACCGTATTTCGGCCACTGTAGTGTTTTCCGgttatacatacatgtatatattctttaaacCAGTATATTTGACCAACACCATGGAGACTGGAAACCGACACCACTCGGAACAATTCATCCACGACCTCTCCCACCCCGGCGCTCTGGGCTTGTGCCCCGAGATGCTGGAAGTCGCGGAACAGGCCTGTCGGGCCGGAGATTATGATTTAGCGGCCGAAATATATGCCTCCCAACTGGCCGATCTCCAGCACCCCGACCGGGGACTGTGCCTCCGGAAAGGAGACGCTTTGGCTCGGGCAGGACGGATTGCGGAGGCGCTGGACTCCTACTGCACGGCGGCTAATCTCGGCAGGCTTCGCCCGgaggagctggggctgctggtgGAAAACATTGCTAAGACGCTTCGGGAGAAAGAACTGTCTAGTTTGCTGCGAAAGACTAACCCTAAAGAGGACCTCGTCAAAAGAGGGGGAAATAGGGACTTTGTTTACACGTCTAGCGGGCAAGGGGACCCGGAGCGCTTTACAGACCCCATCGGGGACGAGGAGGCGCTGGACATGTTCTCCTGCCCGCTGTGCAAATGCTTGCTGTCCGACCCCACCACGCTACAATGCGGACATACCTACTGCAAACGGTGCCTGGAGGACGACGCAGTCACTGAATGCATGGGCTGTAAATATAAAGTGAATAAAAAGGACGGACAGCTGTGCGCCATCGGCTTTAGAGTGAATGTCATCCTTTGCCATTTATTAGAGAAGTGGTTCGACTCGGAGAGTAAAGCTAGGAAGTTGTGGCTGGAAGGCGAAAGTCTGTGGAAAAAGCAAGACATTCAGGCTGCCTTGGAGAAGTACAACGAAGCGGTAGAGCTAGCAGCATTTGGCCCTAAAACCAACCACCTCAGCcagcatacatttttcatgttgaGCAGAGCGCACTACTTGAGAGCATCTGCACTAACTAAGGCTGGCAGGATGGAGGAGGCTTTACAAGAGTATTTCTTCTGTATTGCATTGAGGCCCGACTGGAGTTTAGTAAAACTGGAAGCCCAGAAGATCCTGAGCGAGATGTTCTCTTCAGTATTCGAGAATGACAGTCTGCCAGCTCCCCTGCGGCCTCAGCCACTGTCCACTCACCTGAAGCCCTCACTGCTCAGCTCCATTCACTCACCGCTGACACACGACAGTCAGAGAGCAGGTTCCTCCAAGGACTCGGTATTAAATATAACCAAGAGCGGGCCTTGTGACAGCAATGTTTTCAGCGGTGTTAAACCTATGAAGTCGCCTAAGTCGCTGACTGAACATGAATTCTCCTTTGGGGATAGAAAGACCCTGAACCTTGTCCTCTCCAGTCTTCCTGGCCCGAGCCTCAAGAGGAAATGCCTTAGTGACCCTTCCAGTGTTGGCCCCCCCAGCAAACTTTTAAAAGAAGGTGGGGACTGCTTACCTCAGAAACCCGCTGCTTGTAATGGATGGAGGGAAGTTTCTGCTTCGCTTGTTGACAGCTCAGACATGGAATGCTCTCTCTGCATGAGGCTATTTTATGAGCCAGTCGCAACTCCCTGCGGACACACCTTTTGCCTGAAGTGTCTGGAGCGTTGCCTTGACCATAACCACAACTGCCCTCTGTGCAAAGAGAACCTATCAGAGTATATGGCTACCAGAGTGTACAACAAAACCTTGCTATTGGAAGAGGTGCTCCTCCGCTACCTGTCTGAGGAACTGTTGGAGAGGAAGAAAGTTCACGAGGAGGAGCTGAAGGAGCTATCAAACTTGAATAAGGAAGTGCCCATCTTTGTGTGCACCATGGCATTTCCCACCATCCCCTGCCCCCTGCACGTCTTTGAGCCAAGGTACCGGCTCATGATCCGCAGATCCATGGAGACTGGAACCAAGCAGTTTGGGATGTGCATTGCAGACGAGCTTAAAGGgTTTGCAGACTATGGCTGTATGTTAGAGGTCAGAGACGTTAAATTCTTCCCAGACGGCCGCTCAGTAGTGGACACCATCGGCGTGTCCAGGTTTAAAGTTCTAAGCCACGGCCAGAGGGACGGTTACAACACTGCGAAAATAGAATACCTGGAAGACAAAAAGGTGGAGGGAGAGGAATACACTGAGCTGGTGCGGCTGCATGACTCCGTGTACGATCAGGCTGTGGCCTGGTTCACCTCCCTCAAAGAGAACATGAAGAACCAGATTCTAAGCCACTTTGGATCCATGCCTGGAAAACAGTCTGATCCTCAGGCCAGTCCCAGTGGACCTGCGTGGTGCTGGTGGCTCCTGGCGGTTCTGCCCTTGGAGAACAGAGCTCAGCTGACCATACTGGCCATGACATCTCTCAAGGAGCGCCTGATTGCTATAAGACGTGTGCTGATCTTCGTGACCCGCAAAAGAGCTCGATGACCACAGTGCACCTCAGGGATACTCATTTCGAACTGTGGAAGGGCCACCCATTGGAGAAAACTAGAAGGGTTCACAAgcgtttgtttttatttatccacCAGCAAAAGATGCACTCCCAACTCCTTGTACTCTCTACTAATTGAGTATCTGTCTTGCTTCCCAAGGTGGTAATAAGCCATCGCTGGGAACGCAACTCCAAATTATATATTCCAGTGGAGTAACGGCAAATCATAATTTGAGTGAAAAACTGTCACAGAGATGCGGTGGTCCTCCCTGCTGAACTGGAAATGTGggggatttttgttttggaatgCACAATTACCCTTTTTTAAAATCCCCTGAGCGTGGGGTGCATCTTGTGGAAGGCTTAATCTATTCTTATTCTGTAGctttatttgcaaaaaaattCATATTTCAGTCTGTGCCTGATCACCCTGACAAATCTGAGCCATTGTCCTGTTAAATATTGACATTCAAAACAAGCTATCACTTAATTGTCAAAATGTTCTTCCAACTATTTTGACTTACTGAAGCTCTAATATGCCTCAGATGTCTTAACTTGGCACGCATAAGGTTAAGAGTGATCCATTTGTCTACattgtaaatttgtaaaaatgccaaaaatgtataattccaAGAACTAGAATGTAGGTGtccttagttttgttttttctggttgTTTTCCCAATACATTCAGATCTATACCCACATATACTTAAAATATCATCTGTTCTGTGAAGTATGTTATACACTGAGGTTTATCCCAGAGTAGGCACTTCAGATAATACTTGATCAACAGTTTACATTAGCTATACATCACATTGATTGTTAAAGCCTTTTGAAGACACCGCCTTTGTTCACCTTCAGTGGGTAGCTTTAGACAGAAGGATCTAATTTAAGACAGTGACATTTCACCTCATCTTCGGTGGTTGTAAACTCACATGTGCTGCACCTGCCCCCTATATCTTAATATACTGAACTGTTATTACAGAAACTTTTAAACTTGTTCACCAATCGTAACAATGACATTGGACTGATCCCGGTGaggttagattttttttttgtgagggaGGGGGATGTTTAAGGTGCAAGTTTACTGGTAATCCTTTGACTTTGAAGCAGCACTAAGCTGATTTATGCTACATGAACTAATCTGTAATGGAAGCGAACAATCTCCCAAAGAAGAGAAACAAACTGACAAAGGTTACACTGACCTTGGGCTGCCAAGAGAAGTGTTTTATTGAGGTTGATAGTCCTTctattgtttggttttaatgaaAAACCATTAAATCAGTTTCAAGTATTTTTATCTTAGAAAGACACTGTGTGAGTAGCAGTCCATAACACGCCCCTCCTTACTCGTACTAATAAAACACAGCGAAGACAAATTAAGCGGCAGCCTCAGGTTTGTGAAGGCTGGCCATATTCTCTCCCATAGGGCTGTTTAGTTTAATGGCTGCCATATTAAATTGAGTATTTGTTTTAGAATATGCTCTTGGGGAGTTCCAAATTAACATTGGTCCctaaaatgctttgaaaaaatTTTAAAGGAGCTGGCAACATACATTGTTATgagtattacttttattttgtatgtacttATAAAAAGCATCCTCAAGAGTGATGCAAAGATTAGTTCCCTAAaaggctttaaaatatttttctcttgaGACATTAACTTTAATAACCTGGAAAGTTATATAATATGTGCCAAGTACAGCTAAAATCATAAACTGGTAGTCTTTAAAATAAGTACACTGAAAATACCAACTTGAATTTGATGTACTGAAAAGCATTTGTAAGACTAAAACTTTTGTAAGATGAAAAAGCTGATTTTCCAGGTTGTGTggtaatttgttcattttaaaccatATGAATGGCTGTATCACTCAGCGTCCCGGGCATTTTGGAAGGAAAGCTGTCTTAAGCACTGTTGAGTTAACTTTGTGTAATGTTATGAAGTGCTCTGTTCACTAGTAGTAGATCTCATTAAGTTTAAACAAACTTAGTGGGCTGTTCATATAATTGATAATACTGCTTCAACACATAGTATCAGCCAGAATTAAAGAATGTTACAGTTATCTAGATTCTGTATTGGTTAAGTATTTAacattgcaattattttatttactcaaACAATTACACGTGTGAAATGGAGGATGAAGCCTGGATTACTGTTATTGTAAGAAGGGCAGCTGGTGTGAAGTTGAACTCCTATTCTATACATTGAGGTTTCGTATGTTGTGATTGAATTAATGTGAATGATCTAAGTGTTTCTGTTAGCTTCAAGGACCCATGCAAAGAATCAATGTACAATTGAGgcctttaaatgttttctgtaagaCTTTTTCTACTTTcaatttactgtattttctgaGTATATACTTAACTCATCCACTGTGTTAGCCAATTCTTGTCTAGGGTTATCACAAAAATGCTGCATTTATCacttaatgtatatttgtatgataagagaagTATATTTAACTTatgttgtatttgaaataaaagacacaaaatatatagtCTGTATGAGAATATGAAGATCTTTAATATTGCaaatttcacttttca

Function

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88084 lncRNA upstream 6728 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 210630 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 229597 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 234813 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 284377 15450778 ~ 15451268 (+) True G70409
TU88167 lncRNA downstream 169295 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 487992 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 741293 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 981760 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 1279842 17028960 ~ 17097964 (+) True G70835
AMCG00014494 mRNA upstream 10205 15715800 ~ 15725440 (+) True AMCG00014494
AMCG00014496 mRNA upstream 32186 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014490 mRNA upstream 49746 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014487 mRNA upstream 64497 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014489 mRNA upstream 80800 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014501 mRNA downstream 31471 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014500 mRNA downstream 74158 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014503 mRNA downstream 125465 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014505 mRNA downstream 136145 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014504 mRNA downstream 158463 15907581 ~ 15916966 (+) True AMCG00014504
TU88057 other upstream 55857 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 55857 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1378777 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5726997 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8319051 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 380407 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 716563 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1654393 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2522736 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 7106224 22855342 ~ 22855646 (+) True G71525

Expression Profile