RNA id: AMCG00014496


Basic Information

Item Value
RNA id AMCG00014496
length 1503
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00014496
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15700154 ~ 15703459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTATCCGTCGGACACTTGGGACGGGCGGACTGCGCACTTCCGTGTGTCTAGGTGGGGTGTCAACGTGATTTCATTCGGAGCTTCTgatagaaagagaaaatgcaGGATCCAAATGCAGACACGGAGTGGAATGACATCTTGCGGAGGAAGGGCATCCTGCCTCCAAAGGAGAAGCCGGTtgaggaagaggaagatgaGGAGCATGTGTCACAGCAGCAGTCAGTGGTGAAAACCTATGAGGACATGACTCTGGATGAGCTTGAGGAAAACGAAGATGAGTTCAATGATGAGGACGAGCGAGCCATTGAGATGTACAGacAACAAAGGCTAGCTGAGTGGAAAGCTAAGCAGatcaaaaatgcatttggagAGTTAGTGGAGATCTCTGGTCAGGATTATGTACAAGAAGTAAACAAAGCTGGCGAGGGGATCTGGGTTGTGCTGCATCTTTATAAAACAGGcatCCCTCTCTGCACCTTAATAAATCAGCACCTAACTGAGCTTGCAAGAAAATTCCCACAGACAAAATTTCTCAAGTCAATCTCCACAACCTGTATACCCAATTACCCTGACAGGAATCTGCCCACTATATTTGTGTATCTTGAAGGTGATATGAGGGCACAGTTTATTGGACCACTGCTCTTTGGGggcatgaatttaaaaatagaagaACTGGAGTGGAAACTTTCAGAAGCTGGGGCTGTGAAGACAGACTTGGAGGAAAATCCTAGGAAACAGATTGAGGATAAGTTGATGTCATCAATCAGATGCTCTCTCCCAACAAGAAAGGACATCGACTCAGACGAAGATTAGTTACTGAAGGCTCTGAAGCCCATCGTTGGTGTTTCCACCCAGTACAATGTTGACctattttgcatgttttccttCTGTGTGGTGTATCCGCATCACCTAGACACTCTCCACGGACTGGCCTTGTCTCCGAAGAGAGGCGTCTACCAGGGTCTTCCTTCTGGATAGGATGCACATCGATGTTATGAGGGATGGGAGGATTTCACACTGACCTCATGAGCTGAAACATCATGTCATATTTGGAAatcctgtgtatttttttaagatcaatgtctttttaagaaaaaactaatgttactattaaaataataatactgtaaataatacCATTCTTCTCTGGTATGTGATTTTTAATTcttcaacataaaaatgaagATCAGGTAATCCAAATAAAAAAGGTAGAATATTTGcaccattatttgtattattattggtgtttCAGAAATGTGCTCAGgcaagaaaatacatgtttttcattttttgctgTAAATAGCTTCAAGCAACATGTCTTTTATTGAATAAGCAAACAAATACTCTTAATATGATTCTGCAAACCATCCAAAGGcaataatctaaataaaaaaaatttgACAACCTGGAACTCAGGGGAGAAAACCagcaaagagattttttttccctcatctTGAATATATAAAGTCTGGaatatgtaactgaatgaaGGTAAGCATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87982 lncRNA upstream 175139 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 194106 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 199322 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 248886 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 269302 15350642 ~ 15430852 (+) True G70378
TU88084 lncRNA downstream 23975 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 214954 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 533651 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 786952 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1027419 16730878 ~ 16733637 (+) True G70776
AMCG00014490 mRNA upstream 14255 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014487 mRNA upstream 29006 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014489 mRNA upstream 45309 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014488 mRNA upstream 82989 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014482 mRNA upstream 177673 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014494 mRNA downstream 12341 15715800 ~ 15725440 (+) True AMCG00014494
AMCG00014495 mRNA downstream 32186 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014501 mRNA downstream 77130 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014500 mRNA downstream 119817 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014503 mRNA downstream 171124 15874583 ~ 15877671 (+) True AMCG00014503
TU88057 other upstream 20366 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 20366 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1343286 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5691506 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8283560 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 426066 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 762222 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1700052 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2568395 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 7151883 22855342 ~ 22855646 (+) True G71525

Expression Profile