RNA id: AMCG00014502


Basic Information

Item Value
RNA id AMCG00014502
length 3239
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00014502
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15947580 ~ 15954701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTTGGGCAGGATTACAGAGCACCATACTTCCAAGAGCAGAGCAGTGCCGGAGGTGTGGACCCGGATGTATGCAGCAGCTTCATGGGCTTGAAGGACCACCTGGATGATGGAATAGACAGCATCCTGTACCTGGGTCTGGATTTGGATTACCTACATGTGGAAAGCACAGACCGACAGTCTGGCCTGAGCGATCCCTGGTCCGGGAGAGAGAAGCCTGTGATGGACAAAGTGGAGGGAGTGGCAGGGTCAGCAGAGGACACCTGCAGCAGCTCCCTGGGAGACTCTGAAGAGAGTGCTGGCTCAGACAGTGACATAGAGCAGCTGCCTTGCGCCGAGGGGCCGCCCAGCGGGGGGTCTTTACCCAACACGCACCGGCAGCTCTGTCGGTCGCCATGTGTGGAGCCTCCAGCCAGGACCGAGGAAAGCCAGTCGGATCTAAAGCCCGAGGAGAGCAAGCCACCAGACGCGCTCAGGGAGTACCAGACCAAAGTGGAGTTTGCACTCAAGTTGGGATACTCTGAGGAACAGGTGCAACTGGTGCTCAATAAGCTGGGCCCCGAAGCGCTGATCAATGATATCTTGGGCGAGCTGGTGAAGCTGGGGAGCAGGTCGGAAGCAGAGCAGGGAGGTGGAGGTGTATCCatgtcttcctcctcttccacatgttcttcctcttcctcttcctcctcctcctgtgtttctgtgcctGCTGACACTCGCCGCCCTGAGTCCCCCCCCCAGCTGGAGCTGCTGGATGACACGGATAACCTCAGACCCATCGTAATCGACGGCAGTAACGTGGCAATGAGCCATGGGAACAAGGAGGTGTTTTCTTGCCATGGGATTAAATTGGCTGTGGACTGGTTTCTGGACCGCGGCCATAAAGACATCACAGTGTTTGTTCCTGCCTGGAGAAAAGAACAATCCAGGCCAGATGCTCTCATTACAGATCAGGAGATCCTGCGGCggctggagaaggagaagatCCTGGTGTTCACCCCGTCGCGCCGTGTGCAGGGACGCAGGGTGGTGTGTTACGACGACAGATTCATTGTCAAACTGGCATACGAATCTGACGGCATCATCGTATCCAATGACAATTACAGAGACCTTGCCAATGAGAAGCCAGAGTGGAAGAAGTTTATTGATGAGCGGTTGCTCATGTACTCATTTGTAAATGACAAgtTCATGCCCCCTGATGATCCACTTGGACGCCACGGTCCCAGTTTGGATAACTTCCTGAGGAAAAGGCCTGTTATGCCTGAGCACAAAAAACAGCCTTGTCCTTATGGAAAGAAGTGCACTTATGGGCATAAATGTAAGTTTTACCACCCAGAGAGAGGTACCCAGCCCCAGCGATCTGTAGCTGACGAACTTCGTGCCAGTGCTAAAAACACTGCTGCCAAAAATATGAACGATGCAGGACTGTTCAAGAGCCATAGCATGCCATCAAGCtccaaagcagaaaatgtgtCCGATATCAAGCGTACAGCCCCTAAGAGGCAGTCGGATCCCAGTATTCGCACCACAGTGTACAGCGAGCTGGAAGAGAGGCTGTCGGCCACAACCAAAGCGGAAACACGTTCAGTCCCCTCACTGGTCTGCAAAAGCAACTCCTCTCAACCTCAGAAACAGCCAGCAACCAGTGGCCCTCCATCAATACACTGCTACCCTCAGGATCAAAGAGTCACTATGGTTATGACCAAAAACCACGTTACACCTCCGCTGGCTTACAATGAGCAGTATCCCAAATGTGACTCCCCAGACATGAGCTATTACTCCATGGTGAATGCCTACCCTAACCTAAGTCTGTCAGGGCCCCGCAGCCCGGACCGGCGCTTCTCAGGGGACGCAGAATTCCGGAATAGCTCCGTGGCCTCAGACTGCAGCAGTGAAGGCAGCATGAGTTGCAGTAGCAGCTCCGACTCCTATGCAGGCTACAATGAGCGTGCCTATATGAGCTCCCCGGACCCCTTGCTTGAAGATAACCTCAAGTGCCACCACCACCCTTCTGCACCCCCTCCTCCTACCCACTCCCACCATCATAGTCGCCTCCATTCACAGCCTTTCATCCAGAGCTACCACGACACCTTAACCAGGGCCCAGAGCTTTGGGCATGAGGAGCCCAAATCTCACCTGAAGCCAGCAATGCCCTATCTTCCCCCACATCTCCAGCACCCCCCAGTGGGGGCACGATCCAGTTTCCCCACGGACTACTCTGCCCCACAGAACCCACAGCACTCCCAAAGCTCCCAGATGAGTCGGGCCTTGGTGTCCACCAGGATCGACAGCATCTCGGACTCTCGGCTCTATGACAGCTCTCCGATGCGCCAGAGAAAGCCCTATCCTGGGCAAGAGTGCTTTGGAAGCTGGGACAGTCTGAGTTGGGACACTTATGGCTACCCCCAAGGATACTCGCTGCCCAGCAAACCCACCCAGCCTTGCTATGAGCAATTTGCCTTCCAAAGCATGCCAGAGAACCGGGAGCAAGCCTGGCGGATGCCCTGGAGAAGGGGCCACCTACAGCAGGAGCCGCCTAGCCATACGAGGTACCAGGATGTGCGGGAGAAAGTCTTTGTTAACCTTTGTAACATCTTTCCAGCCGACTTGGTTCGTCTGGTAATGAGTCGGAATCCCCACATGACAGATGCTCAGCAGCTGGCTGCTGCTATTCTTGCCGAAAAGTCACAACCAGGTTACTAAACGGTGACTCGTTTGGTTTGATGTGAACCCCATATTAGTACCACTGTACTAATGTGCTGAGGGAGGTTTGCTACAGTAGCATTTGTCTTTGAATCCTCTACAGGGATGCTTGAATCAAAATCAGCAAAATACCTGTGAAATGtgtataatgttttcattttgctggGGATAGATTGATCCAGTTTTGACAGATGCGTGTCTTTTTACATCCAAAATGAACCAACCTAAGCTGctaataaaatgattttttttttttttcttttgtgcagTTCTACAgaccttaaaacaaaaaaacacttgccAGAGTCTGAAGCTGTTGCTTTTgataaaggtgtctgccaaaaaacaattattattattattattattattattattattatatcagtAAATGGAAAAtttgcttctttttattttggattccCTGCATGTCAGCACAATCAGACCCAGCATTTGACCATATTATATGAATTTCATTATGTTAAAGTGGAGGGCTTTTATTGTATGTCTTGAGGTGTCTgcttaaagtaaat

Function

GO: NA

KEGG:

id description
K18668 ZC3H12, MCPIP; ribonuclease ZC3H12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88167 lncRNA upstream 28959 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 218663 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 422565 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 441532 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 446748 15500558 ~ 15500832 (+) True G70413
TU88264 lncRNA downstream 282409 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 535710 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 776177 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 1074259 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 1177362 17132063 ~ 17173062 (+) True G70846
AMCG00014504 mRNA upstream 30614 15907581 ~ 15916966 (+) True AMCG00014504
AMCG00014505 mRNA upstream 44533 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014503 mRNA upstream 69909 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014500 mRNA upstream 76701 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014501 mRNA upstream 166030 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014506 mRNA downstream 53698 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014508 mRNA downstream 174778 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014507 mRNA downstream 184772 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014514 mRNA downstream 210144 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014512 mRNA downstream 237222 16191923 ~ 16208140 (+) True AMCG00014512
TU88057 other upstream 267792 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 267792 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1590712 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5938932 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8530986 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 174824 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 510980 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1448810 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2317153 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6900641 22855342 ~ 22855646 (+) True G71525

Expression Profile