RNA id: AMCG00014504


Basic Information

Item Value
RNA id AMCG00014504
length 2663
RNA type mRNA
GC content 0.39
exon number 8
gene id AMCG00014504
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15907581 ~ 15916966 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATTTGAATTCGACTTGATCAGGAGTGTAGATGTACCAAAAACTATCAAAAGACGAGCAGATATTGAAATGTGAACCAGCTGGGCTGTGAAAAGGTTTTCTATGGTCTGAAGTTACACTTGTTGGACACATCCATGACGTCACTATCAGATATCACACACCTTGAGTCTGCCCAGGTGTGTGATCTGCGGACAAGGAGTTCAGTTCACTTACCTGTGAGAGAGACCGCGAAAAAGACACACCATCGGGGATAATGGCCAGAGAGTTCCTCCTTACtttcttgctttgtttcttcTCAGCTTCCTGCTCTGATAATGATGACTGCATGTTGGAAGTGACCACGCACTATGTCCATGTTGGCGAGGCTCTTGTGCTTAAATGTGACATGTATTCATTATACGCGGAGAGTGAGAGCAATCTCACCCTGACCTGGTTGAAAAATGACACTGAACTTCTAAATGATACCAGGCTTGAGAAACATGGGGATAGACTGTGGTTTTTACCGGCAGAGCTATCTGACTCAGGATACTATGTCTGTCAAATAAGAGGTCCTACCGTGTCCTGTAAAATGCAGATGATCGTGTCTGTGGTGAGCGACTCATGCTTCCATAGGGATTACTTCAGCACCAAAGAGCTCTACCACCCGACACTCATTCCCTGCATAGGATGGAGAGATGTCCACCTCTTGGACCAGCAGCCTCAAGTTAAGTGGTTTAAGGACTGTGCACCCTTTGAGAAGAATGGAGATGCAACAGATCCGTATGACAATAAACTCTATGTACGAAATATGACTATCGAGGATGTTGGAAATTACACCTGTCAAATCAATTTCACCCACATGGGGGAAAACTACACAGCATCAAGTACAACAGAGATATCGACTAATGaacGCATGTCACCGGAAAAGCCATTTGTGTTATATCCCAGGAATGTAACCTTTGAGGTTGAGAGGGCACACAGAAGGCACTTTTACTCCCAATTAATGGTGTCCATTATTCCCCTGATAATAGCAGTAGTGTTAATTTACTACTTTTTCAAGGCTGACATTGTCCTGCTTTATCGAAAATTGCGCTTTATGACCCGGACAAGAACAGTagCAATGCACAGCATCATTGAAGAGTCCATAAAGAGAAGCAGGAGACTGATTATCATCCTCTCATCTCATGTTCTGGAGGATCAAATACCAACTGCCTTTGAGCCACAGATGGGGTTGTATGCTGCCCTGATTGCATGTGGAATCAAAGTTATCCTCATAGAAATGGATAAAAACATTGACTATTCACTTCTGCCAGAGTCTGTCAGATACATCAGACAAAAGCAGGGAGCCTCACGGTGGGTGAGGCACAATAAGGAGTGTCAGCTGTCACCAAATACTCGTTTCTGGAAGTCTGTGCGATACCAAATGCCACCTGAGCCAGGACTGGTACATACATAAAGTTACCTGAAGGCTCCAAACAATAACttacataaacattttacaataaataaacatttgatgattgtattcattttgtataaCTACATAAATAACACCTTGATAGTCACATTTTTCTTAGACTGCTGCCAGTTTGAGTCTGCAGTGACAGAGACCTGTGTTACCAACAATGTTCACTGGGTGGCTTAGGTGTTGCAAACATCTGACTGATGTGTAGCTTCTGAAATGAATGTTTTGCTCTGTAAAAGCGTAAGGTATTCTGCAATGAGTTCCCAATGTGTGGGATCATTTGAATGTTAGCTGTTATTAAGACATTTTGGGCAGAATATTGATATGCACCAAGATGcataatttcaatttaaatttaaaggaCCAAATACTTAAAGAACCATTGCAAATGTTAAATGGTTAGTTTAATCATTTGAATGATGATATAGTTCAgtttaatgcaattaatgtgTCAGCAACAACTGTATCTAAAGCCagtgaaaataatgcatttaaaaagtgtaaaatataacTACTTGCTCAATTTGTAACAGATAAGCTACACAGCATTGATCATGATTGCACTGCAATACTGGTATAGGGCAATACTGAGCGTGTGCCTGCAGTTTTTTGCTAAATCTACTTTTGGTTACATTGCATCAAGGTGATGGTTAAATTTTGAGGTTACAGTATATCATTATCATCCTATCATTTTTATGAAGGTATATTcttgacattttcattataagGCTGTAATGACTTGCTTTCTGAGAAATCCTGTTTGTGACCAAAACTTTTCATTGCTAAGCAAATTTTTGAAGCCCAGCAAATACAAGAGCATGAAAGAGCTGTCTAGTATCCTTCCTGTCTTTTGAAACACTTTATCTAGCAAGACATCAGAAAATAAGGAGGCTGTACTTTTTAATCGTTGCTGACTAAAAGTTAATATCACATTACCAAAGTGTAACATGACCAATATCCACAATATGTTCACTGAAGGAGGATGTACTGTATGTTTGTAAAGCCATTCCCTTGCCCAGAACAGTTGTTACACTTTATTATCACCATTCTGTTGTTGTATAGTTTGTTTACAAATGTCTACTAAGATCAATTTATGGAAAAGCATTCTTGGAACACTGCATTGTGTTCTGCATTCCCTTATTCTAGCCTTGGGGAATGTTTATCTATGTTAACagtatgaattaaaatgtaacaaaaatctataaaaatgcAGTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88084 lncRNA upstream 178664 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 382566 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 401533 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 406749 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 456313 15450778 ~ 15451268 (+) True G70409
TU88167 lncRNA downstream 1447 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 320144 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 573445 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 813912 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 1111994 17028960 ~ 17097964 (+) True G70835
AMCG00014505 mRNA upstream 4534 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014503 mRNA upstream 29910 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014500 mRNA upstream 36702 15823276 ~ 15870879 (+) True AMCG00014500
AMCG00014501 mRNA upstream 126031 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014495 mRNA upstream 158463 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014502 mRNA downstream 30614 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014506 mRNA downstream 91433 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014508 mRNA downstream 212513 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014507 mRNA downstream 222507 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014514 mRNA downstream 247879 16164845 ~ 16189661 (+) True AMCG00014514
TU88057 other upstream 227793 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 227793 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1550713 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5898933 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8490987 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 212559 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 548715 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1486545 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2354888 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6938376 22855342 ~ 22855646 (+) True G71525

Expression Profile