RNA id: AMCG00014507


Basic Information

Item Value
RNA id AMCG00014507
length 2196
RNA type mRNA
GC content 0.52
exon number 17
gene id AMCG00014507
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16139473 ~ 16154656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGTGTTTGGGGAGGATGGGGACACGTTGCTGGTGGATCTGAAGAAATCTCCAAGGGACAAGATGGCCACTGACATGCCAGCAGACAAAATGGAGACCCTCATTCTAATGTCAAAACTTCAAGATTTCTACTCTCAAGGAGGACACGGATTAGAGATTAACAGCCCCTATCTTGACCAGGCCTGCGTAGCTCTGTTTGAGGATAAGGTTTGGTACCGGGCACAGATAATTGGTCTCCCTGGAAGCAGGACTGTGGAGGTCAGGTTTGTGGACTTTGGAAACCACATGACCCTGTCAGTGAACAACGTGCGAAAAATTAAAGATGAGTTCTTTGCTTTACCAGCAATGGGGGAGCAGGAGAACCTTCCAATCAACCCCGATCTGGAGCTTCCTGACAGCCTGAAGGACATCCGAGTAAAAGTCACTCATGTCAAATCTCCAGGAAGCTTTTTTGTTCAGCTTCTTCAAACTGATGGTCAGCTTAAAAGGATACACCTGAAATTGAAGGAGGAGTTCTCCAAATCGGACCCAGTGCTAATGGATTGGAAGGAGAACATGCATTGTGCTATGCTGATCAATGGGGTCTGGGAGAGAGGAAGTATAATCACTACTTTCCCTGGAAATATAGCAGAgGTAAAGCTCTGTGATTTTGGAAACCATGTGCTCTTACCCTTCAACAACCTGAGACCTCTGCACCAGGACCTCATGGGGTCTCTGGCTTTAGAGTGCTGTCTGGGAGACATCagGCCTGCGGGGGGCAGCAGCACTTGGACGGCCACGGCATGCGACTTCATTTCATTCTACTTAACTGGAGCTATGGCGATCATGACTGTTAAGCTGGAGGACATCCCCACAGTGGAGGACTGCTCTTATGGTGAGGAGTCGGCCCCTATGCCTCTGTATTGCCCCCCTGCTGCGGCCCACAGAACCTTTccgaagagagagaggagccagCCCTACAGCCCCCCCGACCTCCCGCACTGTGGCCGAATGCAGGTGCTTGTCACCCACGTTGGGGATGACGGGGTTATCCATGCCATGACCAGCCACGCAGAGCAGATATTTGAGACGCTTAAAACAGACCTCCAGCAGCATATTAAATCTCTTCCTCGCCAAAGGCCTTACAGCTGGGCGCTGGGCCACGGCTGTGCAGTGATGGGCTCTGACATGCTGTGGTACCGAGCAGAGGTGCTGGAGGTGATGGGTGGGAATGTGAAGGTGCGGTATGTGGATCAGGGGCTGATCGAGAACATCCCCATGTGCCACATCATCCCCACGGTCCTGTATAAGGAAGTGCCTCGGCTGTGCATTCCCTGTCAGCTCCATGGAGTTATACCTGTTGGCACAGTTTGGCAGACCGATGCAGTTGCTTTGCTAAAAGAGTTACTTCAGTGTCGATCTGTTGATATGCAGATCATGGAGCTGCCCTCAGAGCCGCTTGGCAAGGTGACAGTCCAGATCCATTTTGACGGGATGACTCTGAGTCGTATCATGGAGCACCATCGGCACGCCTCGCGGGACCCCTCTGTCAGCGTGCCTGAGGGACTGACAGACGAAAGGCCGCTGCCGGGACTCTTCACTTATCCTCCATTCCCAGACACTGGAGAGCACTTTCCTGTCAGAATCAAACACATCCGCACCCCTAACGAGATCGTCCTATGCCCTGCGGTGGAGTCGGCGAGTGTGGCAGACTCTGAGGGCCTGGACGCAGCTCTGAAGCGGGTCAACGAAGAAGTGCACAGCCTGCCGCTGCTCACCGATTTCTCCTCAGAGGCCCCATGCTTGGCAAAATACAGTGATGGCAAATACTACAGAGCAAAGTTACTCAAGATTGAGAACTTCAATCCTGTTAAAGTCCTAGTGAGGCATGTTGACTACGGTTCAGATGACTCGTTGACCACAGACTGcctGCGTGAAATCCCTGTGGAGCTCCTGCAGTACCCGTGCCAAGGAATCGAAGTGAAAGTGGCCGGGATTAGGCCGCCTGAAGTTGATGATGAAGAACAGAGGTTGTCCTATAAACCGGAGTGGAGCTTAAAATCCATAATCGAGATGATGGATCTGCTGCATGGAAAACAGCTGACTGCATCTGTGCTGtCAACAGAACCCGAAATCACAGCACATCTGTATGATGAAGACGAAATGCTGGTACTTTTGCCACTCGTGGACAAAGGTCTTGCTGATTTAATGTAG

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88167 lncRNA upstream 220852 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 410556 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 614458 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 633425 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 638641 15500558 ~ 15500832 (+) True G70413
TU88264 lncRNA downstream 82454 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 335755 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 576222 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 874304 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 977407 17132063 ~ 17173062 (+) True G70846
AMCG00014508 mRNA upstream 441 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014506 mRNA upstream 102713 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014502 mRNA upstream 184772 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014504 mRNA upstream 222507 15907581 ~ 15916966 (+) True AMCG00014504
AMCG00014505 mRNA upstream 236426 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014514 mRNA downstream 10189 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014512 mRNA downstream 37267 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014513 mRNA downstream 103585 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014516 mRNA downstream 191378 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014517 mRNA downstream 217097 16371753 ~ 16373757 (+) True AMCG00014517
TU88218 other upstream 6671 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 459685 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 459685 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1782605 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6130825 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 311025 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1248855 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2117198 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6700686 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11680847 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile