RNA id: AMCG00014508



Basic Information


Item Value
RNA id AMCG00014508
length 987
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00014508
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16129479 ~ 16139032 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCTACGGTCCCGCCCTTTTGCACATGCGCATTCCCGCCTACGTTAAAAACATTGCGCCCACCCTGAAAGCCCGTTGTGGTGGAGACGTCCGTGTGGGAGTGACGCCTGAGGATGAGATAGTTGGAAACCTACCACATGTCCTAGTTTGTGGGCATGTCTTCTGCGCGTCATGTCTGCGGTCACTGGCAGATCATGATAAAGCTGTAGTTTGTCCAGAATGTGAGGTGGAAACTCCACTGGATGATGGGGGAGTAGATGCACTTCCAGGAGACTCCAGGATAATAGGAATGATCTATACTGCCAAAATGAATACAAGGAAAACCCGTGTTAATGTACCATTTGATGGTGAAGGGCTGAAGGTAGAGAAACAAATACCAGCTGAGCCTTCAGACTGCACAGCTGGGGAAAAGGCTGCACTGGAGTGGGTGTTCGTTACCCATGTGGTAAACCCAAACCATTTCTACATAAGAAGACTTTCAGAGAGCAAGGCTGCAGCTGTGCTGACCAGAAGgatcaatttgttttgtaatgggGAGAGAAATATTTTTAATCCTAGTGATGTTCTGGAATTAGGTTCTACAATCTttgtgaaatggaaagaaaacatgtGGTGCAGAGCAACCATAATGGAACTTTTCCAAGAGTGCAAGGAACCCCGGGCTGTACCAAGGTGTACCATGGCAGAGGTTTCTGACCTCAAAGtcttttttgttgattttggcTTCAGCAAAAGGATACCTCCTGCAAGATCTGAAAACCATTCTGAAGCAGAAGACGGTCATGTTCTGGACTTTCAGTTGGACATCAGTCAGTGCATTAGAAAACCTGACCTCGCAACTCGTGCTGAAATGAACAAATGGGCTTCATTGTCCATCAGATGTTCACTCAAGGACATTGTACCTGCAGACTTGGCAAGAGAATTTACTTTGACATGTCTCttttataagaaaataattgtagtaAAGGGGCTCCCCTCAATACTTTAA

Function


GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88167 lncRNA upstream 210858 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 400562 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 604464 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 623431 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 628647 15500558 ~ 15500832 (+) True G70413
TU88264 lncRNA downstream 98078 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 351379 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 591846 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 889928 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 993031 17132063 ~ 17173062 (+) True G70846
AMCG00014506 mRNA upstream 92719 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014502 mRNA upstream 174778 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014504 mRNA upstream 212513 15907581 ~ 15916966 (+) True AMCG00014504
AMCG00014505 mRNA upstream 226432 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014503 mRNA upstream 251808 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014507 mRNA downstream 441 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014514 mRNA downstream 25813 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014512 mRNA downstream 52891 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014513 mRNA downstream 119209 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014516 mRNA downstream 207002 16346034 ~ 16370627 (+) True AMCG00014516
TU88057 other upstream 449691 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 449691 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1772611 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6120831 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8712885 7413640 ~ 7416594 (+) True G68848
TU88385 other downstream 326649 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1264479 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2132822 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6716310 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11696471 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile