RNA id: AMCG00014513


Basic Information

Item Value
RNA id AMCG00014513
length 4798
RNA type mRNA
GC content 0.47
exon number 22
gene id AMCG00014513
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16258241 ~ 16278438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCAAGGTTTTTCCAATGGTTTGGAGCCCAAGCTCGGTGCAGAAGAAAGCAACACGGCAGCAGAGGAGGAGTCTGCCATGGACACGGGAGTCCCAGAAGTTGAGACGGTTGCAGCGGTCCAGGACACCACGTCAGCCCCTGACGATCTCCAGCACACCTCGAAGGTGGCAGAGGAAGATGACGATGACGTAGTGTTCATAGAGCCACTTCCTTCAGCACAAGAGGAGAGCACGCCGACCCTGGTTCCCAGCACTGGCACCGCTGCCGAAGCCCCCGTTTCCCAGACTCCAGACCGTGCCGAGGAGACTGCTACAGTGCCTCAGCACTCGCAGGATTACACGCCTCCTCCGCCTCCCATGACTTTGGCCAACAGTCACGGCGAGACCATCGTTATAGATGATGAGGAAGATGCTGAGCTGACGTCTTTGCAGCAGCCCACCTCATCCTCTGTCACTGGAACCAGGGCTGGTCAGGAGTCCAATGCTGCTGCGAGTTCTGCTGAGGCTACAGAGGCGATGGAGAGCCAGGTGGTGGCAGCTGTGCAGACTCCACTGAGCAGCACGGAGCCAGACTCTGAAATCCAGATCGCCAGCGTGACAACGCTTGACCTGGGGGCTAGCCTTGGCAGTGGTGGCCAGGGAGCCTCTGTACCTGGTGCCCGGGTCGATGGGGACATGAATCTGATGATAACCAGTGTCACCTCTCTGCACAACAGCAGCCTGGCGGAGGTAGGCAATGGGTTGCAGATAAGCAACACCTTCAGCCTCAACCCAGATGCACAGAGTGCTCCCACAGCCTCACACACTGACTCCAGCAGGCCTGTGGGCCATTCCAGCACGGGGACTTTCAATCCAGGAAGAGTCGGCACAGCCAGGGAGGCTGCTCAGAATGGGGAAACGGGGACCCACCAGAGACCTGATTCGTGGATATCCCAGTCAGCCTCTTTCCCCCGAAATCAAAAGCAGCCAGGTGTTGATTCTCCATCTTCTGCGGCTTCCTTGCCAAAATCTGTCTTTCCGCCTCCAGCCTCTCAGCAGCCCTCTAAGCCGGTCAAAGTCACCTGTGCGAACTGTAAAAAGCCGCTGAGGAAAGGGCAGACGGCATACCAGCGCAAAGGCTCGGCCCATCTCTTCTGCTCGACCACCTGCCTGTCAGCCTTCTCCCACAAGCCTGCCCCCAAGAAGAACTGCACAATGTGCACAAAGGACATTACTACCATGAAAGGAACCATTGTTGCTCAAGTGGACTCCAGCGAGTCCTTCCAGGAGTTCTGCAGCACTGCTTGTCTGTcctcatatgaaaataaacagaatccTCCCAAAACCCCCATCAAGACCAGGTGCACGGTCTGTGGGAAACTAACTGAGATTCGCCATGAGGTTAGCTTTAAAAACGTCACCCATAAGATATGCAGTGATCACTGCTTTAACCGGTATAGAATGGCCAATGGTCTCATTATGAACTGTTGTGAACAGTGTGGAGATTATTTGCCTAATAAATCGTCTGCAAATCATTTCCTTATAATTGATGGACAGCAGAAACGGTTCTGCTGCCAGAACTGTGTTAAGGAATACAAGCAGACTCATGGCAAAATAACATGCTGTACAGGATGCAGAACTCCATGTAGATTTTTCGACATTACTCATTGCATAGGACCCAGTGGTAATATGGAGCCCTACTGCTCTACTGCGTGCATGAACTCGCACAAGTCCAAGAACTCCAGTCCTGCAAGTTCTGGTGCAGCACCTGCATGCCATTTTTGTAAAAGAAGTGCATTACCTCAGTATCAAGCCACACTGCCTGATGGGAAGCTTTATAACTTCTGTAGTTCTAACTGTGTGACAAAATTTCAGACTTTAAGTGTTCAGTCCTCAACAAATGGGCAGACTGCACATTCCTTGAATAATATCCAGCTGAAATGCAATTATTGTAGAGGAGCTTTCAGTTTAAAGCCAGAGACGCTGGAGTGGGAgAATAAAGTCTACCAGTTTTGCAGCAAAACTTGCTGTGATGACTACaaaaaactgcactgtattgtaacaTACTGTGAATACTGTCAAGAGGAGAAAACTCTTCATGACATGGTGAAATTCTCAGGAGTGAAAAGACCTTTCTGCAGTGAAGGCTGTAAGCTGCTGTTTAAACAGGACTTTGCAAGACGATTAGGTCTGAAATGTGTAACCTGCAGCTACTGTTCCCAAATGTGTAAAAGAGGAGCCACTAAAGAGATCGATGGGATTATGCGAGACTTCTGCAGTGAAGCCTGTTCCAAGAAGTTTACAGACTGGTATTACAAGGCTGCGCGCTGTGACTGCTGTAAAGTGCAGGGCAATCTTACGGAGTCTGTACAGTGGAGGGCGGAGATGAAACATTTCTGCGACCAGCACTGTTTGCTGCGCTTTTACTGTCAGCAGAACGAGCCCAACATGTCCACCCAGAAAGGCCCTGAAAATATGTCCTTCGgGCAAGGAACGCAAACAACGAAAAGCACCgGATCAAATCAGACTTCATCAGTTTCATCTTACTCCAATTGTGGGATAAAGGATGTGAAGAACAAGGCTGTGCTGTGTAAACCTCTAACAATGACGAAAGCCACATATTGTAAGCCGCACATGCAGACGAAGTCCTGTCAGACAGATGAAGTAGTGAAGACTGAGTATGTTCCAGTCCCCATCCCTGTGCCTGTGTATATCCCAGTGCCCATGAACATGTACAGCCAGATTACCCCTGCTCCAGTGACGCTACCCGTTCCGGTTCCAGTGCCAGTTTTTTTGCCCACTACACTGGATAGTGCAGAGAAGATTGTGCAGGCCATTGATGAGCTCAAGGCCAAGATTCCCACAGATCCGCTGGAGGCTGACCTTTTGACCATGGCTGAAATGATAGCCGAGGCAGATGAGAAGCCAGACAGTACAGATGTGAAAATTGAAAGCCAGAAGAGTGAAGGGGCCAGTTCAGATGAGAAAGAAGAGCCAGATGATTCTTATGAGCCTGAACTGGATTTGGAAAATGATTTCCCTAGAGTTCCCGATCCGGTTGTAGAAGAACTTGATAGTGAAATAGCGTTCATGTTGCCTCCTGTTTTGGGAGAAGAAAATGAAGAGAAGCCTCGACCTCAAGTTAAAAAGAAGGGATACAAGAGAAGAGCAGCTGAAGATAATTCCCATGTAATTTGGCCTGAAACTCCAGACAGTTTGTTTGCCTTAAAATCTACTTATGGCATTAATGCTTGGAAGCGATGGGTGTCAACTACAGCTACAGCTGTAACAGAAGGCACAGAGGATAACCAAGAACAGgaacaaccaaaacaaaCAAAACCAGTGAGATTAAAAAGAAACCTCCTGTCACATTCTGCTGCTGAACTCAACTACGGACTCTCGCGCTTTGTCAGTGAGGTTCGAAGGCCAAACGGGGAGAGCTATGCACCTGATAGCGTCTTTTATCTCTGCCTTGGCATCCAGCAGTATCTGCAAGAAAATGGAAGAACTGACAACATTTTCACTGATCCATATTACCAACTATTTGGAcaggaattaaataaaacactcaaaGACTGGCAACCAAGTGTACTTCCTGATGGTTCCTTATTCTGCAGAATTGAAGAGCAGTATTTATGGAGCAGTAAGCAGCTTGGAGAACATTCCCCAATGGTTTTGCTCTCTACCCTAGTCTATTTTAACACTAAGTATTTTGGCTTAAGAACCGTGGATCAGCACTTGAGGCTTTCGTTTGGAAATGTTTACAGGCAGTGGAAGAAGAACCCTCACACTAAAGATACCACTGTCTGCATTCGGATACCTTCCATTTTTGAGGATGATCTAGaaaaaacagtatcaagaaaaagaaaacgcaAAGATGACGACACTGATCCTGATTATGAACCAGATGACGGCTCTGGAGGTGGATCTCACTGCCCAGTAAAAAAGCATGAGTGTCATTTGTATGAGCTCTACCTCTCTAAATGtCCAGGGAGTCTTAAACAAAGAAtggatacattttacatgaaacCCGAAAGCTCCAGTGCCCCGGACAGCCCATTATGGTACAGCACTACAGCCCTGGAAAAGAACATCTTGGAAAGCATTCTCACCCGCATTCTCCTCATCAAGGAGGTTTACAACGAAAGGGACTCTTCGGACCCAGAAGACAGCGAATGAACCTGCAGACACTTGTGAACTTACCAGGAATATACAGCATTAGGAGGATGCGCCCGCCGCTCCACTTTCTTAGGGAAAAAAATCTCAACTCCATACACATGTAGCATTACACCCAGATTGGGTACagttctgtaaatattttttaagtggGGGAGAAATTGgtgttatacatttattattttagcatACTAAATGCTCCTTActgaaaccttttaaaaatatatatttattgattaggTTTATTTGTAACTTTTTACATAACGGAATTTGAATGAGAATGTGccatgtttattgttttgttccgTTTCTCCCCTTCTGGGTAAGAGCATTAAATATTGCTGCAGCTACAGTGATTTAaaagtctctccctctctttcgcTTTGGAAAATGGGGATTTTTTTCCCTGGACAGTTTCTACTAAAGGGATGATGTAATAGTCTTTACTTTAGCACTATTAAAGACATTTAGAAAACTCGCTTTTTGTTAAGGGTATTTTTAATGGCAGTACAAGGGAAAACCAGAActtgacagttttgttttaatacaaagtGGATGTGGCAATGTACTAAGAAATCTGACCCATAGGAGGCAGTAGTGAGGCTCAAACACTTTGTCAGAAAGCTGCTATGTAATCGGG

Function

GO: NA

KEGG:

id description
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88264 lncRNA upstream 17903 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 339620 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 529324 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 733226 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 752193 15505814 ~ 15506048 (+) True G70415
TU88391 lncRNA downstream 211973 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 452440 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 750522 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 853625 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 971881 17250319 ~ 17253671 (+) True G70865
AMCG00014512 mRNA upstream 50101 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014514 mRNA upstream 68580 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014507 mRNA upstream 103585 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014508 mRNA upstream 119209 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014506 mRNA upstream 221481 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014516 mRNA downstream 67596 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014517 mRNA downstream 93315 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014524 mRNA downstream 158739 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014522 mRNA downstream 170225 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014525 mRNA downstream 187183 16465621 ~ 16469209 (+) True AMCG00014525
TU88218 other upstream 125439 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 578453 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 578453 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1901373 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6249593 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 187243 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1125073 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1993416 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6576904 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11557065 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile