RNA id: AMCG00014514


Basic Information

Item Value
RNA id AMCG00014514
length 4988
RNA type mRNA
GC content 0.50
exon number 33
gene id AMCG00014514
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16164845 ~ 16189661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCCATTCTTCATAAACTGAGGGTGAAAAGCAGGCTTGCTATACCCGGAAGTGCGAGTCAGGCAGGACCGGGATTGGCATTTGCAGTTGTGTTTTCACTCGCCAGACCCCGACCAGCAGCCGCACTTCGAGCTGATCCCCCGGCACAGCTGACGTGGGAAACTACACagACTGTGACTCTGAGAATATCTAGCCGATCCAAAGGACCCTCTGAAAGCCCTGGAACTCGGCTGATAAGTTAATCATGCCGGTGTTTGAGAACTGCCTTGTGGCTCTGGAGGTGAAGGACCTGCCcatcaaagaaaagaacaactTAAAGAAATCGATAACCGCAAATGGAGGGAGCATTACTTATGTCATCAATAAGAAGTGCACCTATGTTGTTGCGAGTAACATGGATACTGTGAGTTCAAATCGCCTGACCAGTATCCGGAAGTTCCAGGTGCCTGTGGTGGGGATGGAGTATGTGTCTCAATGCCTGGAGAAAGGGAGACTTCTCAACACTGGGGATTACCCACCTGCTAAATCACAGAGACACAGCCCGCCTCCAGCCACAACACACTGGGGACATGTGGAGGAACGCTCTGGAGAGAAGCCCAGAGGGCCGCCGGAGACTCCGCAGGAGGTGAAACTGGAGGAAAACGCAAAGGGGGGCAGCTCCCTTGGCCAGTTCAGGATTTACAGAGAGAATGAGGCAGGGTTGCCAGCGTATCCTTCGGATTTCAAGGTGGCCAAATATTTGGTTTTGAAGAAAgctGATGCTGTGGTTGTGGTGGAGCTGCACAGCTGTAAGGGAAACCCATCACTCCCCTTCCGTGTGACTCGACTCTGGAGGAGTCCTGCCGGTCAGGCACCAAAGACCAAAAAAGAAATGATATTCACCTTGACTTCAGAAGACGCCATGATGGCCTACAGACTTGTTTTAAAGGAACTTAAGGACCAAGGCTTCAGTCCAATGAAGGAGCTGCCCTCAGATGTGAAACTCCTCGGGTCAGAGAAACTGGGAGAGCTGCTCCTGGAGCAGAGCCTCAACAGCAGCACCATCTCCAAGGAAGTGGCTGTGTTTGTGGAGCTGCTCTGGACAGAGGCCCTCGGTCGACTTAGTAACCTGCTTCTCAACCCCATTTCCAGTGTCAGTTCTAATGATGTGAGCCGGGCTGAAGGGATCTTGCAGCAGCTCCGGAAGGCTTTGAGCAACGGAGCAAACCAGGGGCAGTTGTTTGCCATCATGGCCGAGTTCTACAGAGTGCTGCCACACAAGAATATGGCAGACACTCTGATCACACCCAAGGTCGTCTCACAAAAAGAGGATCTCTGCCAGCTAATCAGAGACATTATCAATGTGAGCGAGGCCACACTCTGGAGTTCCACGCCCTCCTCTCTTGCTAAATACCGAGCCTTGAGGTGCAGCATTGAGCATGTAGATCCTGGCACTGCTGAGTTCTTCACTGTCAAGGAACTGGTAAAATATTGTTCAGTGGAGATTCACAGAGTGCTGCGTGTGTGCAGAGTTCCCGAGCTCCTGGAATTTAAGAGGGAGCTGGGAAATGTGCGCCCCCTGCTCCATGCCTCCGCACCAAGCAACTTTGTGGGCATCCTGTCCAGggggctgctgctgcccaAAGTGGCTGTTGAGCAGCATGGGGTGAAGAGGACAGATCTTGGAAACCTTGGCAGTGGCATTTACTTCAGTGACTCCATGAGGACCAGTATGTCGTATGCAAAGCCTACTGTCACGGACGGCACTCGTTTGCTGGTGGTGTGTGACGTGGCTCTGGGGGAATGCAGAGACCTCCGCAGCAGAGACCCCAGCTTGGTGTCGGCGCCCACAGGCTGCCATAGTGTGCATGGGGTGCGGCAGACCCCACAATTGTCCTCCGACTTCCAGGATGATGAATATGTGGTGTACAATACTAACCAGactaaaataaagtatgtgGTCCAGTTCTCTGAGGACTATGAGGAAGTGAAGGCGTTTGAACCCACTGTGGACATTTCCACTGAGCTGTCCGAAGCTGTTCTGATAGACGACTCAGTGTCTGAGGCGGAGGCTGACTGCAGTGAGCTGTGCAAGAACCCGCTGGAGGGCATGATGGCAGGACTGCAGGACAGTGCTGGGAAACTCCTCCCTCTGCAAAGAGTTCACGTCAAAGGCAGAGTGATAGACCTCCTGGCAGAGATCATAATTTTTCAGACATACACGAATCACAGTACTGTTCCAATAGAGGCCAAGTACGTTTTCCCTCTGGATGAGTCAGCAGCTGTTTGCGGGTTTGAGGCATTCATTAACGGGAAGCATTTGGTGGGAGagGTGAAAGAGAAAGAGCAAGCCCGGCGAGAGTACAGGCAAGCCATTGAGAAGGGCCATGGAGCATACCTAATGGACCAGGATGCACCTGATGTGTTTACAATTAGTGTTGGAAACCTCCCACCAAACGCCACTGTGTTGATCAAAATCACATATGTGACGGAGCTGAGTGTCAGCGAAGGGGCCATCGTGTTCCGTCTGCCCGGCAGTGTGGCCCCGTGGCAGCAGAGCAGCGCACTGAACGAGAGAACTCAGGACACTGTGAACAAGGTTTGTGTGACTGACATGGAGACAGAGAGGCGTTTTGACCTGGAGATGTCTGTCGAAATGCCTTATGAGATGACACACATTCGCTGCCccacacacaatattaaaatgaagAGAACACAGTGCAAAGCAGTGATCAGCACTGTGAAGGGCGACTCTCTGGGGCCTGATGGCTTTCTTCTGTCTCTCACCTTATCCGAGATGCACCTGCCCAGAATGTGGGTGGAGAAACACCCAGATAAAGACAGTCAGGCGTGCATGCTAGTGTTTTACCCGGCATTTGAGTCCAACACAGACCCGGGTGAGGGGGAGGTTGTCATTCTCTTGGACACCTCCAATTCTATGAGGGGCGAGACCCTTCAGAATGCCCGGAGGATCGCCCTGCTGGCACTGAAGGCCCTCAACTGCAAGGTCAACATCCTCTTCTTTGGCACAGACTTTAAGGAATTGTTCCCCTGCTCAGAATACTCTACGTCTGTCTTTGAAAGTGCCAAGAACTTTATTATGTCTGCACCACCAATGAAGGGCAGCACTGATCTATGGAGGCCTCTGCGCAGTTTAAGCCTCCTAGCTCCATCTAAAGGCACCAGAAATCTCCTCCTGATTTCAGACGGCCATGTCCAGAACGAAGGCCTCACGCTGCGGCTCGCCCAGGAGAATGTTCAGCACACGAGGATCTTCACCTGCGGAGTCGGTTCCACAGCCAATCGACATATGTTAAGATCCCTGGCTCAGTCGGGAGGAGGTGCTTATGAGTTTTTTGACACAAAGATGAAACACACTTGGGAAGAGAAGGTGCAGTCCCAGGTGCGACGGATGGCGTCCCCTGGCTGCAGCGCAGTGTCGGTGAAGTGGCAGCAGTTCCACCcttctgcccccccacccatccAGGCCCCCTCACAGCTGCACTCACTCTTCAATGACTGCCGCCAGCTCGTGTATGGGTTTGTACCTCATTGCACCATGGCCACTCTGTTGGGCAAAGTGAGTGATCAGGAGATAGAAACGATGGTTTCCACCTCAGAGCTCCAGAAGACTAAAGGAACGTTGCTTCACAAGCTCACTGCCAGAGCTGTCATCCGAGATTATGAAGACGGAAGCCTCCACATGGATGAAACGGAGCATGAGgtgAAGAAATCCGAACTGAAGTCCTACATTGTCAGTCTGAGCAAGGAGTTTTCCATTGTGACACAGTACACAAGCTTCGTAGCCATCGAAGAAAGGGACGGTTACTGGGAGTGCACTGCAGAACTCGGGTCAATACTAGACATAGATGTGGATTATTTTGCCAATGTCTTCCTGAAAGAAAAGGGAATCCTCTCTCTAGGAATGAAGGCTCGAGAGACAATCCTGAAACTGATTGCTACCCTGCTGGTTCTCCAGCTTATCCGCTCCAAGGAAGAGGTTGAAGGAGTGCGGCTCAAGACACTCTTTAAGCTGGAGGAGATCCCGCCACAGGAAAAGTCAGAGCGCTGGGATGATGTGAAGATGGCGGTGGAGTGGGTCAAGGCCGCAGACAGACAGTACCCCTGTATCTACAGCCGGCTGGAGTTGGGTTGGGACTGGGAGTCAGTCACGCGCCAGCTGCTGCGCATCGACCCACCACAGGCCCACTCTCTCCTGAGGCCCGCATGTCTACCCTCCCTGAGCCTCAGGAATCCTGTCTTATTACAGTGAAATCTACCCAGCTTGGCAACACAGTGCCAGCTCACATTTGGCATGTGGCAGTGGTGTCAAAACTATCTGTACTGCCCTAAAAGTCAAGTCGTATATATTATATCCATAAATGTTAACATATCatgcttaaaaagaaaaaagcacataGTCTCTGTTGCTTAACATTACTCAAAGATCTCATTACTCATGTTTCATATTCGCCAAGGGAGATTCTCCTCCATGTGTACTGCAGGAGGTAGGTCATGGTCTACAGGTACAAAACCACATTGCACTTTTAAGGTCTTTAGGTCTTTCAAGAGCCTGAACTGTAAGTTAATTACTGTCATGACATTAAATTGAAGATATGTTACAACTGGAAGTGGACAGTGAATATGTCCACTGGTTGGCTTCAGTGTAATCACTGGTCCGAGTGTGAAGCTGGTGATGGGCTCTTGTGATTGACAATGCATGGCATCACctttttattataatcattGAAAAGACCGCTTGAGAACTTTTTGAAAGAATTAACTGCACAATTaatcaaaactaaaatgtttacctctctttttaaatggaaaattaatgGGTTTTGCATTTGACATGATGATTTACCTgctttaatctttttaaaatgtttagctGTGTAGGTGCTATTATAACTTTTTAGACATTTTAGCTGAGCCTATATTGCCTTAAACCATAATGTATTGGCTGTTTTGAATTTCTAAAAGCTTTTTAATAAATCTTGTATGCc

Function

GO: NA

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88167 lncRNA upstream 246224 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 435928 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 639830 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 658797 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 664013 15500558 ~ 15500832 (+) True G70413
TU88264 lncRNA downstream 47449 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 300750 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 541217 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 839299 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 942402 17132063 ~ 17173062 (+) True G70846
AMCG00014507 mRNA upstream 10189 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014508 mRNA upstream 25813 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014506 mRNA upstream 128085 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014502 mRNA upstream 210144 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014504 mRNA upstream 247879 15907581 ~ 15916966 (+) True AMCG00014504
AMCG00014512 mRNA downstream 2262 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014513 mRNA downstream 68580 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014516 mRNA downstream 156373 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014517 mRNA downstream 182092 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014524 mRNA downstream 247516 16437177 ~ 16438737 (+) True AMCG00014524
TU88218 other upstream 32043 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 485057 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 485057 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1807977 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6156197 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 276020 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1213850 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2082193 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6665681 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11645842 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072955 True 6579 mRNA 0.47 34 NC_007120.7 20483851 ~ 20501710 (+)