RNA id: AMCG00014517



Basic Information


Item Value
RNA id AMCG00014517
length 816
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00014517
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16371753 ~ 16373757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTGGCAGCGCTGAGCGGGTTCATCAGACGGGCAGCGCTCCCATTGGCGTCTGTACTCGCACCCTGGACAGCTTCCAGCACCTACCGTGTCCCAGCTGGGTCTGAGCGGGGTCCGCAGTCCCCTCTTAACATGATCGCCGCAAGCCGAGCAGGACGATCTCTGGTAGAGGACTGCACGATGAGAAGCGACACGCGGGCAGTGCTGCTGGTGACTCTCGGCTGCTTGGCGCTGCTGACGCCGGACTCGACCGCGGCGCAGCCCGGGGGGAAGGTGTCCAAGCGGCCGCTGCGCCCTCGGCCCTGCCTGGACCTGCCGGAGGAGATCCTGGAGCAGATGTTCGGCCGCCAGTCGGTCGGGGTGCTGAGCGCCTTCCACCACGCCCTGCAGCTGGCGCCCCTGCAGGAGGACAACCGCACCTGCCCGTCCGCCGGCCGCCCCGCCGCGGAGCCCAGTGCGCGTCTCCCGGTCAACATCCTCAGCACCTCGCCGTGGGCGTACAGAATCTCCCACAGTCCCACGCGGTTCCCCCGGTACATCCCCGAGGCCTACTGCCTGTGTAAGGGCTGCCTGACCGGGCCACTGGGGGAGGAGAGCCTGCTGTACCGCAGCACCCCGGTCTACATGCCCTCGGTCATCCTGCGGCGCACAGCCTCCTGCTCGGGGGGGCACTACGCCTACACAGAGAGCTACGTCTCCATCGCCGTGGGCTGCACCTGTGTGCCCAACGTGGACAAGGAGGCCCACAGCAGCAACTCCAGTCTGGACAAGGCGGAGATCAAAGCCAGTGACAGCAGCCCTGACAAGCACTCTTAA

Function


GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG:

id description
K05492 IL17D, IL27; interleukin 17D

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88264 lncRNA upstream 131415 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 453132 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 642836 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 846738 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 865705 15505814 ~ 15506048 (+) True G70415
TU88391 lncRNA downstream 116654 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 357121 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 655203 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 758306 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 876562 17250319 ~ 17253671 (+) True G70865
AMCG00014516 mRNA upstream 1126 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014513 mRNA upstream 93315 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014512 mRNA upstream 163613 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014514 mRNA upstream 182092 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014507 mRNA upstream 217097 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014524 mRNA downstream 63420 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014522 mRNA downstream 74906 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014525 mRNA downstream 91864 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014523 mRNA downstream 100037 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014531 mRNA downstream 183807 16557564 ~ 16578157 (+) True AMCG00014531
TU88218 other upstream 238951 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 691965 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 691965 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2014885 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6363105 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 91924 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1029754 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1898097 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6481585 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11461746 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile