RNA id: AMCG00014522



Basic Information


Item Value
RNA id AMCG00014522
length 1137
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00014522
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16448663 ~ 16450651 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTCTCTTCGGCAAGGTGCTTGAGCCCGTAGGGTACATGCAGACCATGCGGGCCCTGGTGTTGGGTGTCTGCTCCTACCTGGATGGCAGCGCCAAGCCAGAGGAGGTGGAGTTTGTGAAGAAGAACTTGGACATCATTGATCAAGAGATGGGCCAGGGGCGGGGCTTGCTGAAGGATGCAGAGGTGCATAGCTGCGAGGACGACCTGGCAGTGGTGTATTATCAGCTGGGAGCAGTGGTACGGGCCGAGAAGGAGCACACCAAGCGGGAAACTGAGGTCTTCCTGCAGTATGTTGTGGAGTACCGCCTGGAGAGGCAGCTGACTGCCCTGTACAGCCGTCTGATGGGTATCTCTGTGCTGACCAACCAGCCTACTCTGTTGGAGGAGATAGTCAGGGACTATAGGCCCAAACGCTGGGAAATGAGAGAGTTTTGCGAGAAGGTGAACTTTGTTCTGGGGACAGGTCTACTGTGCCTTTTCACCCAGGCTTCACTGACAGGCAGGGACCAGGCCCTGCTCATGAGGACCTGGTCTGAGAAAATGGCTGCACTCTACAAGAAGATGAAGGCTTCTGGCTGCTTGTGCTCAGGGTACTTCCGGGAGCAAGCAGAGGAGGACATTCGCAAGCAGATCCAGGACGGGAAAAAGAGCAAGAAGACACCAGAGGAGCAGGCGGCATCCATCCTTAAAACACTGGAAAAGAACTACGACTGGCTGCGCTGGGCAGTGATGGTGCACCAAGAGTGTGTGGatgaggaagagaaagaaatggAGAAGCCAGAAAACTTCATCTCTGTGGCTGAACCCTCTAGCATACATGTGGTGGCCTGCTACAGGGATGGGCCTTCTTCTTTGGATAAGAGCCGCATTCACCAGCTTATTGTAGACCTGGAGTGGAAAATCCCCAACCCTCCCCCTGACGTGTATGCTGCCATTGAGGAAGAACCCCGTAAAGCACGCAGCTACTTGGCTTCCCGTATGCTCCAGAAACTGCAAGAAGGGCTGGGCAATGGGATCTCTGTGCATGTGGTGCCCACCCAGATGAGTATGAAGTGCAACTTCCCCCCGGCCTCCTTCTACCTCTATGAGTACAAACACCGCCTTGCCACAGGCACTGTCTGTGTCTTTGGATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88264 lncRNA upstream 208325 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 530042 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 719746 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 923648 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 942615 15505814 ~ 15506048 (+) True G70415
TU88391 lncRNA downstream 39760 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 280227 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 578309 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 681412 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 799668 17250319 ~ 17253671 (+) True G70865
AMCG00014524 mRNA upstream 9926 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014517 mRNA upstream 74906 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014516 mRNA upstream 78036 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014513 mRNA upstream 170225 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014512 mRNA upstream 240523 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014525 mRNA downstream 14970 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014523 mRNA downstream 23143 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014531 mRNA downstream 106913 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014535 mRNA downstream 133173 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014537 mRNA downstream 241361 16692012 ~ 16719737 (+) True AMCG00014537
TU88218 other upstream 315861 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 768875 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 768875 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2091795 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6440015 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 15030 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 952860 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1821203 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6404691 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11384852 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile