RNA id: AMCG00014523


Basic Information

Item Value
RNA id AMCG00014523
length 5582
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00014523
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16473794 ~ 16481556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGagtgggagagaaggagggggagacCGACAGagggtcagagagagagggagagagagagagagagagagggtgggaaaGTGAGCAAGAAACGAATGCAGAGCAATTAATTTAGATCTCCAGTGCAGCTTGTGCAGAAACTTATCCAGGTTGTTCTTTGGTGcagtattacattttctaaCCACATTAGGGAGCAAAACGTGTTTTTAAAGAGTTtatgttttagaaaaataagcTATTTTTTCTATGAATACTTTGGAGCTATActagtttttcttaattttctttgttttaagttattttcCTGGATAAGAAAGAAATATGCACACAACTCTGTGGAAGGAGAACTCAACCATGTTTGAGACCATGTTCTATGGGCACCCTCAGTGTGTGGAGTGGACCAATGACTTGGAAAGCTCTGTGTACCATCTTGCCAACGCGATATTTGTCTTGGGGTACATGGGGGGCAGTGCGGTGTTCGGGGCCATCTACATCTTCAGCCTCCTGGCCCCAGGCTTCCTGTGCTATGCCTTTTGGGGCTGGATGGGGGCTTGTGGTGCAGATATCGTCTTCTGGAGCGTGCTCCTGTTAATCCTCTGCCTCCTACAACTGGCTCACCTCATCTACCGGCTGCGGAAGGACAGCTTCAAGGAGGAGTTCGACACCCTATACAAAGGCATTTACCTACCCTTGCAGGTGCCAGTGCTAGTCTTCAAAGAGATCGTCACAGCCTGCGAGAGCAAGGTCCTCTCCCTGGACAAGGACCAGAACTATGCAGTGGAGGGGAAGACCCCTATAGACAGGCTCTCCTTCCTGCTTTCAGGGAGGATTCGGGTCTGTTTAGAAGGCCAGTTTCTACACTACATTTTCCCGTACCAGTTCCTCGACTCTCCTGAGTGGGAGTCCTTGCGGCCTACGGAAGAAGGAATGTTTCAGGTGACTTTGACAGCAGAGACGGACTGTCGCTACATTACCTGGAGGAGGAAAAAGCTCTACCTATTGTTGTCCAGAGAACGCTATATCGCTCGCCTCTTCTCCGTGATGCTGGGGAACGACATCACAGAGAAGCTGTACTCCCTCAATAATAAGCTTTTTGCCAAGAGTGGCGTGCGCCTGGACATCCGTCTGCCCAGCCTGTACCACGTCCTGGCTCCCTCCACCAGCGAGGTAGAGAGCGAGAAGACAGAGGAGCAGGGGCCGAGCTTCATGCCTGCTCCACAAAAGACCACCCCGCCTGCTGGCCCAAGAAAGAACTCAGCACCCAATGTGAGCCACCCTTACCCCGGGCACTGGCCCTCAGATACGGAGATGCCTGGTGAGGACTCTACCAGTCTGATAGTGGAGGACTTTGCAGATATGACGGGATCCTTTATGGAATATGGCAGTGAATTATTTGACATAGAGAATGGTTATAGGAGTTAATACACTGGCCTGTTCTTATGTCACATGTAAGTACACTGTgtgctgaaaaggaaaaaagagctGCACTTGTACTAACCTGGCCTTGAAACTGGTTCACGCTTATGTTAACATAAAAGTCGAACTTGTGTGAGTATATGTAATGCAGTTCTCTATTTGTCCTGCAATCTTTTGGCTGGTGTGTCTAATGCATGGCTACAGgacaatgaaattaaatgctgtATTACTTACATGATAGCCAAACATTTCCAGTTTTCAGTGAAGCTTTTCTACCTCAGTATATCACTTTTTGATATACGTTTACCTTACACTGGACCATTTAATTCACAGTGAGAGGCCTGTTTTCACAATTGTATATACCACTGTAAATATAGGTGAAGAAATTATGAAAGGATAATATTGTAAAATTCAAGATAAAACTTAATAGTGTTAGTAGTGTAATGTTTGTTTAGAGATCTTATGAAAAGAGCTGGGAACTGTATTATATCTATGGTCAGGCCTAGTGCCAGCAGATAGCTTGTGTGGGCATCTCTCCATTGCACCTCAGATTGAGACCTTTTCCCCTGCCATGCAGCGCTGGGCCTCTGAGGAGATTGATTTTGCTGAGTGTGTAGTTTTGTGTGTGATCCATTGTCATGCATTACCAGCTCAGTACTGAATCATAGGCTTTGAGAGCTGAAATCTGCAACATACTAATGTCCAACACCATCAGCTAGGTATGTATTTCTCTATATAGTTGGGAAAGGgcctttcaatttaatttgtagaGTAGGTTTTCAAGCCTGTAGcccaaatatgttttgtttagttaaattaagagCTGGCAAGTTTGGGGATAGCCACCAGCCTCTGTTTTAATCCTGCATGCTTCCCTGCAAACAGCCTAGGACTGCGGGTTAGGTTGTGTCCTGGGCGTGGTTAGCTGGAGCAGCTGCTGAGGATTCCGCTGGTATGTCAAAGTTCCGACCTTCAGAACTTGTTTTCAAACCGGGGCCGGAGGTCAGCCGTGTGAAAGAAGAGATCACGGGGCTTGGAGTGGATAACAATATTTCCCTCTGTGCCTGTGCCAATGATAGTTCACAGACGATAATTTAAAAGGTGATGTTCTCTTCTCTCACCGGACAACAACAATTTAATGTTGGGTTCACTCACCGGATTCAGTTtcctatttaaagaaaataattggttGTTGATTCCAAGAGAGTGATCTAGCGTTTCAAAGAGGAATGCTTTGCAGACTTCGTaagtttatttctttgtcaaacTGCAGACCATCATTGGTATCCAAATGATCTTTCTGTAGTGGTTAAGAGGTTTTTGTTGACATAAAGATATACAGCTTTTGCATGCCTTATTTATCATCAATTTACAATTACAACCATTGTCGACTAGAGCTttcttacttttatttaatgtgtacGGTAAGTTGATATATTGTGTTCCTTCATTGTAGGCttgaaaacacaagaatataACAAAATCTATTCTTTTCAATCTCTCAGAAGTTTATGACTCTCTTTTCACAGTAGGCTTTACACATGTGACCTTGggaataaaactaattaaagacTGTCTGATTGTGTAGTTCTGGGAGCTAAATCATTTAATGAAATGTTCCATTGGGAGATAAGTATAATTAGTTGCCATTTGATTCAAAGCATGACCAATTACAAGGAAAGAACGGATCTATTTCTAGTGACACAAATAAAGTTTTATCTTTCTTATGCATGTCACTGTGCTCGGCTGCTTGTTTAAAGACGAATGCTTATCAGGTATCTGTCAGACAACACTGCACTACTTCTGGTTACCAAGTGTGAAGGACAGCAAGTAGAAGGGAGGGAGTTGGACTGACTCTCACTAGCTTAATCACACAGATGACCTTGGATATAGCATAgctttgaaatatgaaattcaaacatagataaatgattaaatcaatagatagacaagagagagagaaagagagaggtcaTCTGTGGTAGAGAAGAGAAGAACAAAAGTCACGTATCTTGTCTTTTTCTCCCACAGCCGGAGACAGCCGACCTGGAAGTCTTTCAAACCGTATTCATAGAGGAAGGGCCCCGTTGGCTCCTACAGAGACCCCCGAGCTctgagacagagaaacagacaggcAGATGGAGAGACGCACAGACATCTGCTTTCACTGAGAGTGCAGGATAGAAGGAGCATCCTATCACTTCCACTAGACTTCACCTGAGATGGGTTTGACATGCACTTGCACAATTGTTTCAGTTAGAAAATCCCACTTGTACTTTCACACACCAAAAGAGATTCCTTTTTTAACTATGATGATTGTTTGATTAGattacatgaataaatgtatttccagGATAACTGAAAACTGAATGTGAGCTTACAAAATTTGATTTCATCCTGCTGTCGTCCTGCTACTAATTAAACCAAAGCATTTTGTAAAGATTTGGTAAGGAAttcctgtttttgttcattgattttacataaataatcacaaacatgcatattgtggtgtgtttttatatgttatAAAGTGTAGACATTAGATTTGAGTTTAACACAagaaaatatttgcagataAACAATAATTCTAAAACATTCAGGTTGAACACTACCTCCTAAATATGGATAGGAAAGAAAAACCTTGGTGTACATTTGTTGTAATACATCACTTATAATACTTTCATGGTTAACTTCCTGCAGATTttggaatacattattttgaaatacaaacaacatACATTAGATTAGAGGTATTcctcaaaacagaaaatattttcacaaaccttactcaaatatgttttaatcatttataaGACCTCTGCGATCATTTCAGTTAGCACTTGAAAAATACAGGGCTATTATTCCGCTCATTTTTTGATAATCACAGTGTGTGACTGGGAGATTCACAAAGCCGTTTAATCCAACGTGTCTTTAGAAAGggtgacattttaaactgattaaaGAAGCACTTACTGATTCTagaatgtttaataaaacaaccTTGGACTTTCATGTTGGCTGCTCCCGTTTAGGACAAGGCCACAAACTACACTTTAAAActgatgtttatatatttttcgcCAAAACACATTatgtataagaaaaaaaaaagaaaaaataagaaaagataagaagcattggaaaaaaaaaatgattcacTATTGAAAAAGGTTATTTGCTATACAGCAGATGTAGTCTCACgcccccccaaacaaaaaaacataaatcacaatTCAAATCCTGTAAATGTCTAATTACTTTTGCCCTCTTCTTCTTAATGCTGTGTGCTATTATGTAGctttttacaaataatgttaatttaaacaaaacgtTTCTTCTAATGAAATATGCTTAATTCCCCTACTCTCTGTTGTTAACCTTAGAGTACTCAATGTAAGGTTTACTTTTCTGTTCTGAATGTACTTTAGTATTGGAATATGAACTATATCACACCCTGACACTCATGCAGAAACTATTTCATAAATGCCATTATGCATATGCATCACACATTGACtggtgtaaacatttttttaatatgttttagtttagtaattttataattttaaagtgtttttaaaaggatgACAATGTCTGATTTACTTGTGCAACTCATTgctttcaatatataaaatataggttAATTCCACATATTAAAGTGAAGCAGAACACGTGCTATCGACAGTTAATCAACATAAACTAAcacaaaatttaattaaaattaacacaaCTTCCTTGCACAGATGTTAGCCTTCACaagaattattatatatactatattaaaataataagatagAAAAATACACATGTGTTATGTATTAGGAGGCAGCTCAGGCACATGTGTTGGTGAAGTGTTAGTCACAGTACAGACATGGCTAGATTTCCATGTTGCTGGTGGTACACAGATGCACAAAGTCATGGGACCATGGAGCATTTCTTCGGAGCACTATATCCTCCACACATAAAGGTTCCTCCTTCCCACTGCAATAGAAATATAACATGATATGATATGGCACCACTCCAtgaatgtattactgtatttcCAGTAGCAAATATTACAGGTCTCAGATGTACAGTACGCTCAAATAAATTATTCTGGAGGATCATGAGCTTTCCcttgcattgtgtgtgttagGGTTAGCTTGGCAACAGAGCTATAACTTCCCTGGc

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88264 lncRNA upstream 233456 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 555173 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 744877 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 948779 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 967746 15505814 ~ 15506048 (+) True G70415
TU88391 lncRNA downstream 8855 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 249322 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 547404 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 650507 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 768763 17250319 ~ 17253671 (+) True G70865
AMCG00014525 mRNA upstream 4585 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014522 mRNA upstream 23143 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014524 mRNA upstream 35057 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014517 mRNA upstream 100037 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014516 mRNA upstream 103167 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014531 mRNA downstream 76008 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014535 mRNA downstream 102268 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014537 mRNA downstream 210456 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014538 mRNA downstream 240642 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014536 mRNA downstream 255927 16737483 ~ 16765552 (+) True AMCG00014536
TU88385 other upstream 4681 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 340992 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 794006 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 794006 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2116926 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 921955 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1790298 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6373786 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11353947 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11387147 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile