RNA id: AMCG00014526


Basic Information

Item Value
RNA id AMCG00014526
length 2393
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00014526
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16439295 ~ 16446968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCAAATTCGAAGATATCCATTTATGCTTCATAACAACTAGTTTTTCAGAATGGATATTTCAGGACATTTCTTCAGAAAGCTACGCCATTTAGCTGTTTTCTTGGAAGGTGAAACGAAGAACCTTGAAAAAGCTAATCTGAACAATGAGGAtgACGCTTGTGAAGGAGGGGTGCGAGCTCTTCATGAACTGCATTCAGATGTCAGAGCCTTGAAAGCGCAGGTTCAAAATCAGCTTGTCACCACTCAGTCCAAGGGCAAGGATGTCAGGGATTTCATTCGCTCAACTCTTATCCTGAAGCAGAGGACAACGGAGGACATTGAGAGGATGAAAAGACACTTTGAGAAGTATGGGTACAAGCCTGTGCCACAGAATCCAGTAGAGGTGAATGGCTGTGAAGCAGCCGCAACAGAGAAGAGTGAAGATGCTGTTAGGGAGAAGCAGAGAGGTGAGGATATGGATGCAGAGCAAGCAGGTGAGGAAGAGGATCCAGGAAAGCAGCCCTGCACGACCCCTACAAAGAACCCTCTCCTTGAGACCGACCCCCTGCGCACCCCTCGGCTGTCTGACTTTGGTCTGTCTGAGTACCACTTCCCCAGTGCCTGGGGGGTGTCGGAGAAACCCGCGGCCACGCAGTCCAGCCAGAGCCAGTGCCCCCCCATCACTGTGTCCCTCCCTTCACTTCCCAAAACCCCCAAGTGTGAGCTGAAGATGGACGACGAGGCCTTCACACCCAGGCTGGAGGGCTTTGGGATCAGCGACTACACTATGTGCCTGAACAACGACTTTACCATGGACCTGCTCCGCAACAAGCCCAGCCAGCCTGCCAGCTTTGCGGTACAATCTGGATATCAAGCAGCCATGAGAACGGCACAGGATCCCTCTACACCTGCACAGAATAAGCACATGGAAGAGAATGctgtcATGAATTCCCCTGTGCCCCCTGTCTTTTGCACCCCGggattcaaaattaataaaaagcaagCTCCACCCTCCCCCCCAAACCTCAAAAAAACAGAgccaacacacaacaacagcTCCACCCCTGAACTTCCATCTTTTGAGACGCCATTTTTCAAGAAGCTCATTCATGACAGGGGACGTGAGGCTGCTGGACCCAAGGAAAAGGCTTTCAGTCACTTGCATCCTCAGTCACCTGGGGTCCCAGTCTACAATAACCATGCTTCATGTGATGTCCCAACGTTCTCAGACATACAGCAGTATAAAAATGATGCTATTCCAGAGCTACCAAACTTTCAGTCTTTGTTTTGCAGTAAATTAACCCATTTCCAAGCCCCAGGTGATGAACTGAGTATGTCCCCAGGGAGAGGGATAGCTGACTTGGATCTACAAATGCCAGAGAGGCCAGACTTCAGCTCTGTTACAGAGGATATCTTtaagcaCCTTTCCCAGTGTAATGCAAAGCCTTCACTCCATGTGTCTCCAAAGCCAAGACCAACCATTCTGAAAACAGAGCAAGACGGAAAAGAGAATAGGGTTCAGAGTCTTGCCACAGTGTCAGAAAAGGATTTCTTGACCCTACCAGATTACCTGAGGCAGATACCTCTGGCCAGCCTCAATCAGGCTATTCAGAGGATAAACAGAGCTCTGGACCTTAACTACACTGGAGCTTATGTGGACTCTCCGGCAAGCCTGATGGAGGAGTCCGAGCTCAAGAGTGTAATAGATGTGGGGCCAAAGTCAAACATCTACTTCCTGTGTCTGGTGGAGCTCAAAAGGCTGAAGAAGATGAGGACCACTGGCACCAGCACTGTGTATAAAGTAGTCCTCTCTGCATGAGAATTAACACTGACAAACTGCTTCAGACCTGAGGAGTGAAACAGGAAGACTCCAGCATGCAGACTTTGCAGGAGCTATAAAACTCCAGGACATTCGGGAAGCAACTGGGAAGTCTTTCAGTGCTTCGTAAAGCTGGGCAATTGCTATCCTGCAGAGAATATtgtataacaacaacaaaacaaactgtccACAGTAATTCCGTCACGGCATGCTCTAGAATCAGAACCACAGTAGCCTCTTGAGTATCAGCGACAAGATGCCACAAGAAAACTTCAGGCAATGAAGGAGATATGtcagtcattaaaaataattagcacACTGTCCAAATAATTGTGAATTTTTCACACAGTGGTTGATAGTCtccaaattaaatgttcttgATGTGAGATTGCTTGTTCTACCTTTAACTAATGGCAGTGCTTTGTACAATTACCTTTTTGTCAGCATTTTTACcttagtttatgtatttaaacctTGTTCTTATGATCTACATGATTACTTGTCTTTAACTAGTAATTTCTATTTTCTGCACTTTGGAATGGataataaactttattaaaaacatagcTTAAGTGACTTAAATTGGTATTATA

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03420 Nucleotide excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88331 lncRNA downstream 69831 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 157396 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 225168 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 735981 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 736959 15700208 ~ 15702336 (-) False G70491
TU88386 lncRNA upstream 18811 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 275105 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 837351 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 902468 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 999900 17446868 ~ 17448717 (-) False AMCG00014555
AMCG00014530 mRNA downstream 7638 16425395 ~ 16431657 (-) True AMCG00014530
AMCG00014527 mRNA downstream 18804 16411736 ~ 16420491 (-) True AMCG00014527
AMCG00014528 mRNA downstream 30007 16380894 ~ 16409288 (-) True AMCG00014528
AMCG00014518 mRNA downstream 62322 16375420 ~ 16376973 (-) True AMCG00014518
AMCG00014519 mRNA downstream 92940 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014529 mRNA upstream 4913 16451881 ~ 16457368 (-) True AMCG00014529
AMCG00014533 mRNA upstream 32919 16479887 ~ 16496581 (-) True AMCG00014533
AMCG00014532 mRNA upstream 50319 16497287 ~ 16504076 (-) True AMCG00014532
AMCG00014534 mRNA upstream 60419 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014539 mRNA upstream 275247 16722215 ~ 16737877 (-) True AMCG00014539
TU87063 other downstream 4776802 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5641148 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7122128 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8055071 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8280705 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11882771 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12942322 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15816199 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16150494 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16150494 32597462 ~ 32619149 (-) False G73127

Expression Profile