RNA id: AMCG00014529


Basic Information

Item Value
RNA id AMCG00014529
length 1512
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00014529
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16451881 ~ 16457368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAATTGTCATGGATAACACAATAGATCCTGATGGGTcctctttaaaaaatgaaatgttatcaGTGAGAACTAGTACTGCTACTTTTGAAAGTCAAGAAGATCCCATCTCATCGACTTCCACTCAACAACAGGCTGTTGGAAATGACGGCGATGGCGATGTCGCCGTGGACATATCAGAAACCAAAATTTCCAGATGGTCCCGTTATGGTTGGAGAGCATTATTTCTTCCCAGGTTAACCAAGAATTCCCTTTATGTCTATGGCAGTATGTCAGCACTGGAGAGGGAGTGTGTCCAACAGCAAGAGAGTGGCACGTGCGTGATCCACCCGTTCAGTGCCATCAGGAATTACTATATCACAGTTATGTTGGTCCTGACATTTCTAAACCTAATTGCAATCCCGGTAGGAATTGCATTTCTAGATGGATATAAACATTTTCGTGCCTGGGAAATCTTCAATCTGCTATCAGACACTGTCTTTTTACTTGATATTGTTGTAAACTTTCGGATGGGTATCATCACCGACAACAGTGAGATagttattttgaatacaaaggAAATCCGCAAACATTATCTGAAAAGTTGGTTTGCACTTGATAATTTTGAACAAGACAGTAACACCACTTCATTTTCTGCTTCTAAATTGGTGAGAATTGTCATGTTTGCAAGAATCTTTAGTCTGGCTCGTCTGCTGCGTGTGTCTAGGCTGGTGAGGTTCTTCAGTGAATGGGAACAGAATGCTACACTGGGAGAGCAGTACTCATTCGGAGTGTTTCGTGCTCTTTCACACATGATTGGGATATCGTATGGCTCAGCTGAGCCGCCATTAGATGAAGCTGAGCTCTGGGTAGTTATGACAAGCATGGTTACAGGAGCTTTGATGTACACCATGATGGTAGCCAATATAGCAGCAATGATGACCAATGTTGATGCACCCTCAAAAGCCTACAGAAGCAGATTTAATCAGATAGAAGATTACATGACCTACAGAAAGCTACCCAGAGAACTGCGGACTCGGATATCCAATTACTACCAGGCCAGACACCAGGGCAAATGGTTTGATGatgcagacatttttaaactggTCTCAAAATCCTTGAGAGAGGAGATTCTAAATATCCTATGTGCTAACGTGCTGAACGGTGCCCCAATGTTCAAAAGTCGGGATGCAAATTTCATCAACGCTGTGTTGTTGAAACTGCACCATGAAGTTTTTCAAGAAGGAGATATTATCATACATCAGAATGCCCCCGGAGATCGTATGTTCTTCATTGAGCGTGGGAGAGTCCTCGTCATGACAACCACTTTCCAGAAGGAGCTGTCTGATGGTGATTATTTTGGAGAGATCTGTCTCCTGACCAAGTGCAAACGGACGGCAACAGTGCAAGCCATGACTCTGTGTCACCTATTCTCGTTGTCCGCTAGGAGCTTTGAAGAAGTCCTGCAGGGATTCCCAGAGATTAAAGAGGATCTGGACAAGACCGCAAATGAGAGGCTGATTCATTTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88331 lncRNA downstream 82417 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 169982 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 237754 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 748567 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 749545 15700208 ~ 15702336 (-) False G70491
TU88386 lncRNA upstream 8411 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 264705 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 826951 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 892068 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 989500 17446868 ~ 17448717 (-) False AMCG00014555
AMCG00014526 mRNA downstream 4913 16439295 ~ 16446968 (-) True AMCG00014526
AMCG00014530 mRNA downstream 20224 16425395 ~ 16431657 (-) True AMCG00014530
AMCG00014527 mRNA downstream 31390 16411736 ~ 16420491 (-) True AMCG00014527
AMCG00014528 mRNA downstream 42593 16380894 ~ 16409288 (-) True AMCG00014528
AMCG00014518 mRNA downstream 74908 16375420 ~ 16376973 (-) True AMCG00014518
AMCG00014533 mRNA upstream 22519 16479887 ~ 16496581 (-) True AMCG00014533
AMCG00014532 mRNA upstream 39919 16497287 ~ 16504076 (-) True AMCG00014532
AMCG00014534 mRNA upstream 50019 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014539 mRNA upstream 264847 16722215 ~ 16737877 (-) True AMCG00014539
AMCG00014540 mRNA upstream 325709 16783077 ~ 16785522 (-) True AMCG00014540
TU87063 other downstream 4789388 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5653734 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7134714 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8067657 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8293291 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11872371 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12931922 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15805799 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16140094 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16140094 32597462 ~ 32619149 (-) False G73127

Expression Profile