RNA id: AMCG00014531


Basic Information

Item Value
RNA id AMCG00014531
length 2942
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00014531
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16557564 ~ 16578157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTTCTTAGCGTCAAAGTGGGCTCCTGGGACATCAGTCAGAGCAGAAGGCCCATCTTTCAGTGACAGGATACAGGCCTGTTTAGAGGGGCTGTTGAAGACTAAGGCCTTCATGCATCTTGAGATCCCAGCCTGGCCGCTCTCGTTCTGGGCTGTGGCCCCCTACAGTGCTGCAGTTCGTGTGTTCTCTGGGATCCAGCCCACAGGGATCCCCCACCTGGGGAACTACCTCGGTGCCCTGGAGAGCTGGGTGAGCCTGCAGGGCCAATACGACTCGGTGCTCTACAGCATCGTGGATCTGCACTCCATCACGCTTCCCCAGGACCCGGCCCAGCTCAGGAACAACATCCTGGACATGACGGCCAGCCTCATCGCCTGTGGCATCAACCCACAGAAGTCCATACTCTTCCAGCAGTCCCAGGTGTCTGAGCATGCAGAACTGTGCTGGGTCCTTGGCTGTTTGACCAGCATGCCTCGCCTTCGACATTTACCTCAGTGGAAGATGAAGAGTAAACAGAAGACCGAAGGCAGCGTGGGCTTGTTCACCTATCCAGTTCTGCAAGCTGCGGATATCCTCCTTTATCAATCCACTCATGTTCCAGTGGGAGAAGATCAGGTTCAGCACCTAGAACTGGCGCAGGACGCCGCTCGCATCTTCAACAGCAAGTACGGCAGCTTCTTCCCCGTGCCGCAGCCACTTCTCAgtTCAACAAAGAAGGTAAAGTCCCTCAGAGACCCCATGTCCAAAATGTCAAAATCAGACCCTCAGAAGTTAGCCACGGTCAACATCACTGACACTCCAGATGACATCAGGATGAAATTCCGTAAGGCAGTCACAGATTTTACCTCCGaggtgacctttgaccctgaACAAAGACCAGGAGTTTCCAATATGATTTCAATCCATGCGGCAGTCGCAGGACTTACAGTCGAAGAAGTGATTTGTCAAAGTAGAGGACTGGACACCGCCCATTACAAACTGGCGGTGGCTGATGCTGTCATCCAGAAATTTTCACCGATCAGACAAGAGGTACAGAGACTCCGAGGTGACCCAGGGTACTTGGAGAAAGTACTGAAGCATGGGGTGGAAAAGGCCAAAGAACTTGCTGTTCCTGTTTATCAAGAGGTTAGAAAACTTGTTGGGTTTTTGTGAGGAAGGAAGAAAACTGAAGAGTGACAAGGAGTTCTTGTGCATCTGGATCATATATATTAGAcctatatatatacctatatttgttatacattatgtaatgtaaataaaatgtataaatacagttGGGGTGCCATATTGTTTTCTGGAACTCtcacaaaatgtttaaagacAACCAGCGTTTTAGATGCGTTTTGTCTTTAACCAAGTCAGCATTGTGACTGTCACACGCTATGTTTACATGACATGAGGTTTTCCAAAAATGACTGTATTTGGAAAACTGAatcagaaattatatttttatcttaaaaGGCCATTTCTCCTTGTTTACATGACAAGCCAGTTAGTCTTAAAGCGTTCCAcagatgttttttgtaaaatgtagagAAGTCATGCAGACGTATCCGTGGCTGAGCAGAAATTAAGATCAGTTTGCACATGTGCAGTGCACtgtcagaatacatttttagaaaactatttacattgtatctattttatttgtttgttaacaTTCAGAAATCAAGGGGATATTTCTAGGTGTTGTTTTCTGCAAATTGGCTTTCAGAAcattgttacattaaaaaaaaaaaaaaaaaaatgtttacgtCACTTttgatatttgaaataatttccaGGAAACTCGGTTGAATTTGCATGCAACATAAAACTAACATATATGTGGAGcacagtgtttttgtatttgttaacataaaactatttgtaaaacattactTGAGAAATCAAGTGTTCCACTTAAtgctatatattaatatatcttttgaatgttttattttttgttttttaaacccttTTGTGATTGGTATTTGCACAGTGCCTCCCTGCTGTTCCGGTAGCTGAGGAATGTAAAGGGCTCCAACCAGGTGTACAGTTCACTTATTTCATAAGGTATAAAACCAAAGTAGAATAGAAGTAAATTAGTAAATCCTTGATTTATATTAGTCAAACATGGAATACATTTGGAAACAAATACTTGTATTAGTTAGAATTATGAACAGGTGTGTCTCATGGAAATGTCCAATCAAAGATATTTGTTTCTTAGTTAACTGTTTACAATTGGAAAAATTGCATTGAAATAACTACAATCTGAGAGAAAATTAAAGCAGACGAGCCTTCCACATCTGGATctggtagaaaaataaaataaaataaattcacagcAGGTAATGCTTCTGAAAGTCTTTTAGAGAACTGATGGCCAGCCTGTATCTGATAAGAATCTGGGAAGAACCTGAGACATAATGTCTGTTTTCAGATGCAGCTGTGTGCACATATATGTAATCAAaaggtttgtgttttgattttgattttaaatatcttATAAATTGTTGTTGTGTTTAGCTGCATTCCCGAAACTGCAATTTTTTGTTGAGTTAGCTTCTTAATGCAGTGTTGCATTTATCACCTATGAGCAGATGTGTCTAAAGGCTTTGCAGCGTTGTTTCCCAAACGTAACAACATAGATGGCTGAGAAAAAATGCTTATACATCCTTTTGGTCAGGACTGTCTAGAGTGGGATAGCAGTGAAATAATATACAGTTGAAACTGCTGAATAAACACAggggaaaaaatgcattctTTCAGAGCTTCTGGTAATTGGAAAGAAGAGCTGTAACAAACCACTTCAACATCTGGTTTACAATAGAATCTATTGTTAAACAAACCTTAGCCTGGGAATATGTAGAAAAggcaatatgttttaataaaaaaatatatacatgtgctccattttaatttaatttattaattgttctttaataattaaataattg

Function

GO:

id name namespace
GO:0006436 tryptophanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004830 tryptophan-tRNA ligase activity molecular_function

KEGG:

id description
K01867 WARS, trpS; tryptophanyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88391 lncRNA upstream 66446 16490411 ~ 16491118 (+) True G70735
TU88264 lncRNA upstream 317226 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 638943 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 828647 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 1032549 15522525 ~ 15525015 (+) True G70418
TU88448 lncRNA downstream 152721 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 450803 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 553906 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 672162 17250319 ~ 17253671 (+) True G70865
TU88575 lncRNA downstream 738096 17316253 ~ 17317556 (+) True G70883
AMCG00014523 mRNA upstream 76008 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014525 mRNA upstream 88355 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014522 mRNA upstream 106913 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014524 mRNA upstream 118827 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014517 mRNA upstream 183807 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014535 mRNA downstream 5667 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014537 mRNA downstream 113855 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014538 mRNA downstream 144041 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014536 mRNA downstream 159326 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014552 mRNA downstream 750756 17328913 ~ 17332815 (+) True AMCG00014552
TU88385 other upstream 88451 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 424762 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 877776 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 877776 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2200696 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 825354 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1693697 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6277185 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11257346 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11290546 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile