RNA id: AMCG00014538


Basic Information

Item Value
RNA id AMCG00014538
length 2040
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00014538
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16722198 ~ 16731869 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCTCACGGGGGGCCGGGGCAGTTCCCTCTGTGCAGCCGCGACTTCCCCTCGGCTCTGCAGCGCGGTTTCCAGGAGCTGTGGCAGGCCCAGTGCCTTTGCGACATTCGTCTGTCTGCTGGAAATGAGACCTTTTCGGCGCACAGGTCGGTCCTAGCCGCAGCAAgttattatttcagaataatgtTTACAACGGACATGAGGGAGAAACACATGGACTCGGTAGAGCTAAAAGGGGTCTCTGCAGCGGGTCTGAAATGTGCCTTGGATTTTATTTACACGTCCCACCTGAGCGCAGACTTTGAGAGCCTGGAGGACGTGCTGCTCACCTCCACCCACCTGCAGATCCCGCATCTCACGCAGTGCTGCGCCGAGCTGCTGCAGCAGTCCCTGAGGGTGGACAATTTCAGCGACATCCTGTGCCTGTCCGATAAATACGACCTGGTCTCTTTAAAATTGCAGTGTTTCTCGTTCATTTCACAAAACCTAGATGTGATTTTGGAAACGGCCCAGACCTCTCTGTTGCAGGTGGACGGGGACGCCGTTTTGGGTGTTTTGGAGAGAGATGACGTCAGTCCGCAGGTCAGCGAGAGAGCCATCCTGGAGCTGTCGCTGAAATGGTTAAATTACGACCTGGACAACAGGCTGCCCTACCTGGAAGACCTGATGAAAGAAGTCCGCTTGGGTCTGATCTTCCCTCCAGAGTGCTTGTCCGAGGATGACTTCAGAGACTCTGTGGAGCTGGTGAAGGCTGTCCCAAAGGGTGACACGTACATTCAGATGATGTCTAAAGAAGATCTTCGGTTTCAGATTGACAGTCCATATCAGAAGTGGTTCAAAATAAGGTCATCGCGAAAAGGGGTGCTGGCAACTTGTGgGGGACAAAATTCCTGGTTCAACAGCAGCCACGAAGAAGAGGCCACCGCTTCAGTGCGGCGATATGACCCTCGCTTTGACAAGTGGACTCGCCTTGCAGACATGAATGTTCGTCGTCGTCGTTTCCACTGCAGTGCCATGGGGGGTCGTATCTATGCTGTCGGAGGAAGAGGGGAAGGTGGCATCCTGTGCTCTGCAGAGTGTTACAGCCCTGCTGATGATGAGTGGACCCATATCCGAGCCTTGCCCTGCCCACTGTCCAGCCACGCCGGCGCGGTGCACGGCAATAAGCTGTATGTCTGCGGGGGCTCCTCGGGGGAGGTCTTCTCTGACTCAGTGTACGGGTATTGTCAAGAGCTGGACGAGTGGACAACCCTGCCCCCTCTGCGGTATGCCAGGGGCTTCCACAGCATGATCTGCATAGAGGACAACATCTACGTCATGGGTGGCGTCCTGATCAGCAGAACCCAGGCCCAGAGGCGCTCCTACTCTGACGTCCTCGTGACAGAGCGTTACTGCCCCATCTCGAACCAGTGGACGGAGCTCAGCCCTCTTCCTGTGGGTCACAGCCAACATGGGTGTGCTGCCCGGGGTTCCTACATCTATATCATTGGGGGCTTCTCCTGGACAGAGGAGGGCTTCCTCAGCAGTGTCCACGTGTATAACATCGAGACAGACACCTGGAGCACGGGCCCTACACTGCCACGGCCCCTGGTCGGGGTTTCCAGTGGGACTCTTACCCTCCCTCACCATCTGTCGCTGACAAACACAAAGCCCGAGCAGCCTGCTGTGTACCTGAGCAGGAAGAAGAGGCAGCGACAAATGAGCTCCACCTGCAGCCCACCGCAGATGAACTCGTTGAACAGCCGGAGGAGGTCAGTGCCGCCTCCCCTGCGGTCTCCCCTGGAACCTGAGGAGGAAACAGACAGCAACAAGAGTGAGACGGACAAGACCCTCCTCACGAATATAATGGAGAAGAATCACAATGAAAAAGACTTTGACAGTGCAGTCAAGCAGCGACACAGCAAGCAGCCTCTGGTCCGGGCTGTAGCGCACACACAGCACGTCCTCGTCCAGCTGCAGCGTGCGAACGTGATTGACTGTCAGCCTCctgacaacacacacaggagTCAGGACACTGTCACTGAGGACAAGCACTGA

Function

GO: NA

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88391 lncRNA upstream 231080 16490411 ~ 16491118 (+) True G70735
TU88264 lncRNA upstream 481860 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 803577 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 993281 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 1197183 15522525 ~ 15525015 (+) True G70418
TU88522 lncRNA downstream 297091 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 400194 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 518450 17250319 ~ 17253671 (+) True G70865
TU88575 lncRNA downstream 584384 17316253 ~ 17317556 (+) True G70883
TU88591 lncRNA downstream 617567 17349436 ~ 17350952 (+) True G70897
AMCG00014537 mRNA upstream 2461 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 110537 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014531 mRNA upstream 144041 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014523 mRNA upstream 240642 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014525 mRNA upstream 252989 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014536 mRNA downstream 5614 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014552 mRNA downstream 597044 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014553 mRNA downstream 632929 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 1047696 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 1217691 17949560 ~ 18029896 (+) True AMCG00014565
TU88385 other upstream 253085 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 589396 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1042410 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1042410 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2365330 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 671642 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1539985 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6123473 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11103634 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11136834 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile