RNA id: AMCG00014539


Basic Information

Item Value
RNA id AMCG00014539
length 5892
RNA type mRNA
GC content 0.49
exon number 32
gene id AMCG00014539
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16722073 ~ 16737877 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGAGTGCAGGGAAGGAGACGGAAGGAATGCACCGCTAAATATTCAAACGCTTTGTACACGATAGAAACAGCGAAACCTGTCGAATTCGGCCATAGGGTCTTTCCTCGATAAGGAGTAAACGGGCACTAGGTTGTCATGGGATTGACAAAGCAGTACTTGCGGTATACCGCCAGTGCTGTTTTTGGAGTGATAGGGAGTCAGAAAGCCAACATTGCATATGTCACCttgaggggaggagagaggggtcGGTATGTAGCAGTAGCAGCCTGCGAGCATGTCTTCATATGGGACACACGCAAAGCTGAAAAGATTCAGATTCTCCAGGGTAATAAACAGGAGGTGACCCATCTCTGCCCCTCTCCGGATGGGGTTCATTTGGCGGTGGGCTATGAGGATGGCTCTATCCGTGTCTTCAGCCTGCTCAACGGAGAGAGCAATGTCTCCTTCAATGGACACAAGTCCGCGGTCACTGTCATGAGATACGACCACCTTGGGGCACGGCTTGTATCAGGTTCAAAGGACACAGATGTGATTGTGTGGGATGTGATCAATGAATGTGGTTTGTACCGCCTGAAGGGACACAAGGACGCCATCTCCCAGGCCGTGTTCCTGAAGAACCGGAACCTTCTGGTTACTAGTTCTAAAGACACTTTTGTGAAATGGTGGGATCTGGACACACAACACTGTTTCAAAACCATGGTTGGACATCGTAGTGAGGTGTGGGGACTGGTGCTGCTGAATGAGGAGAAGAGGATTGTCACCGGCTCTGCAGACAGTGAGCTCAGAGCGTGGGACATCAGCTACTTACAGGAGAACAAAGAAGTGGGGGAGCCAGAGGTGAAGAAGGTGAAAGGGTTGCTGGATGAACCTGAAGACCAGGAGGAGGATCTTGATGAGAACCCTGAGGAGCGAATCCTGAGCTGTCAGAAAGCAGGCTCCATCCTACGAGAAGGGAGAGACAGGGTTGTGTCCATGACCACAGATCTGAAATCCAAAGTGTTAGCTTGTCACGGAACAGATGCCATTCTGGAGGTATTCAGTGTCCTCTCCCAAGATGAGGTACAGAAGTGTAGAGAGAAGAAACtgaagaaagcaaagaaaaaggcCAAGTCTCAGGATGGGGTGGTTGATGAGGAGCCAGTGGTGGAGATGAAACTGGGAGATGAGATCCAGAGACTCACTAAAGTCAAGGCTTCTGACAAAATCAGATCCCTGGACTGCTTTCTGTTCCCAAGCGGAGAGCTGAAGGTATCTCTGCTCCTCCAGAACAACACGGTGGAGTGCTATTCCCTCCGCACCACACAGAAGAATCCCGAGGGCACCAAGACTGCCCGGCTGACTCTGAGTGGCCATCGCACCGACGTTCGCACCCTCGCCTTCAGCTCCGACAACATCGCCATCCTGTCCGGCTCGGCAGAGACCGTCAAAGTCTGGAACAGatcAACTCTGCAGGTGATCCGTACGATGGCCTGTGAATACGCCCTATGCTCCCTCTTTGTCCCTGGAGACAGACAGGTCATCATAGGAACCAAGAGTGGGAAGATCCAGATTTTTGACCTGGCGTCCGGCAGCCTTTTGGAGACCACTGACGCACACGAGGGAGCATTGTGGTCCATCTGTCTTTCTCCAGATCAGAGAGGGATTATGACTGGAGGTGCCGACAAGACTGTGAAGTTCTGGGAATTTGAGCTGGTCAAGGACGAGAACTCCGGATCAAACAAGAGGCTGACAGTCAATCACGTTCGCACGCTGCAGCTGGACGAGGACGTGCTGTGTGTGCGCTACAGCCCGGACCAGAGGCTGCTTGCTGTGTCGCTGCTTGACTGCACTGTCAAAGTCTTCTACACAGACACCCTCAAGtttttcctgTCTCTGTATGGACACAAGCTGCCAGTACTGTGCCTGGATATTTCTCATGACAGCACACTCATAGCCACGGGCTCCGCTGACAGGAATGTGAAGATTTGGGGTCTGGACTTTGGAGATTGTCACAGGTCACTCTTTGCTCATGATGACAGTGTCATGTTCCTGCAGTTCGTACCCAAAACTCATCTGTTTTTCACAGCCGGGAAGGACAAGAAGATCAAACAGTGGGACGCTGACAAGTTTGAGCACATCCAGACCCTGGAGGGCCATCATCGAGAGGTGTGGTGCTTGGCTGTGAGCCCCAGTGGAGATCACATTGTGTCATCGTCCCACGACAAATCCCTGCGTCTGTGGGAGAGAACTAGGGAGCCCATCATCTtggaagaagagaaagaaatggAACGAGAGGCGGAATTTGAGGAAAGCCTGGCCAAAGGTGATGAGCCAGTGGTTCCAGGGGAGACCGCAGGGGAGGCGGCACTGGCGGGGAAGAAGACCATTGAAACTGTCAAAGCTGCAGAGCGCATCATGGAGGCCCTGGAGCTCTACAGGGACGAGAGCAAGAAGCTGCAGGAGCACGAGGCAGCCTGTGAGGCAGCAGGCAAGAAGctaCCACCACCTAAAATGAGTCCCATCCTAGTGGCCTTCGGAAACATTTCGCCCTCTCAGTATGTCTTAGATGTCATCAGGAAAGTCAAATCCAGTGAACTGGAGGAGTCCCTGCTGGTCTTGCCGTTCTCCTACATACCTGACCTCCTCCGGCTGTTCAACGAGTTCATCTGCGGTGGGCTGCAGGTGGAGCTCATTTGTCGCTGCCTCTTCTTCCTGCTCAGGATACACTTTGGACGAATCACAAGCAATCATCTGCTCCTGAACGTGATCAACAGCCTGAGGACTAACACCATCTCTAAAGTGGAGCAGATTAGGgacGTTCTTGGATTTAACCTGGCAGGGCTGAAGTTTTTACAGCGAGAGATTGAAGACAAGGAAGATGTGACTTTCTTTGCTGATGCCACAGATCGGTTCAcggaaaagaagagaaagagaaagaagcgGGAGCGAGCCATTCTCGTAGTTTCCTGAACTGAACAATAAGACACTGTCCCTTCCAGGACCTGACTTTTTTTatctataataaaaaatagccTGTTTCTGTATCTGTACAAGTCCATAAGGATGTGACCTAACagctgaaaataattataaataaaatgagtaaACATacctgaaaatgtttctttatatataaatacagcagcGTTACAGCCTCTTTTCAGACATAAATTTAATGATTGCACATGTTGAACATAttatacaatgcatgatattttaaatattaaattataagaTTTGTTATTGCAGTCTTTActgtatgttaaataaaaatgttggcAGTCTAGCAGCACATTAAGACTACACAAGGTCAAACTTTCATGTGCTTCAGCTCGAACCAAACCTGGTGACATCAGCCTTCCAGtgcagcaaaaaaacaacactctCATAACATACATTAACAGTAGATACAGTGGCCAGGAGGAATGCAGTAAGTTTCCATCAGCTTTCGAAAGAGAGATCTTTTAACTTGGCCAATATGTTTCTTGGTTTGTTAGTCTGGAATGGATTTCAGTCCAGAACAAATCTATCCTACTCCATTCCATCAAAAGCCAAATGAGTCTATAACAATGTAACACATTTGTATCAAATTCTTAACTAAACTGacaatttgagaaaaaaaagtttaggttcaGCAGTACGTATAGGTACATTTTTTCACTTCAACTGAAATTAATTGGCTGTGCTGTAAGGACAATGAATGAAAGACAAAATGGGATATGGTAATACGGATAAGGATAAGATCGGAATCATTAATAGGAATTAAGGTACCTACTTTACTTACAAATCTTGCATTGTTACTTTGTTCTTCCCCGTTCTACTGTGCTAAGCAGTTAAATAAgtgcacaattatttttaagcTGGAAAGTAAGTACTTACGTATTTATCACTGGagaaattgaacacattttggctctctttttttaagtgtcttATCAATATTCTCTTGTAACAGTGGAAGGGTTCTTTGCTTATGTTGTTAATGTGGTGGGCAGCCATACCTTAGTGATGTTCAAGTGTAGttggagaaaaacaatgtgatattGAAGACTGTGGGGACTGCACACTGTTTGGACACAGAAGCGGTCTCTGTATTCTGATATTAGTGTTTTATGGAGGCTCTGTGACTCCTCTCTTCTGACACAGATGGTGAGGGAGGGTAAGAGTCCCACTGGAAACCCCGACCAGGGGCCGTGGCAGTGTAGGGCCCGTGCTCCAGGTGTCTGTCTCGATGTTATACACGTGGACACTGCTGAGGAAGCCCTCCTCTGTCCAGGAGAAGCCCCCAATGATATAGATGTAGGAACCCCGGGCAGCACACCCATGTTGGCTGTGACCCACAGGAAGAGGGCTGAGCTCCGTCCACTGGTTCGAGATGGGGCAGTAACGCTCTGTCACGAGGACGTCAGAGTAGGAGCGCCTCTGGGCCTGGGTTCTGCTGATCAGGACGCCACCCATGACGTAGATGTTGTCCTCTATGCAGATCATGCTGTGGAAGCCCCTGGCATACCGCAGAGGGGGCAGGGTTGTCCACTCGTCCAGCTCTTGACAATACCCGTACACTGAGTCAGAGAAGACCTCCCCCGAGGAGCCCCCGCAGACATACAGCTTATTGCCGTGCACCGCGCCGGCGTGGCTGGACAGTGGGCAGGGCAAGGCTCGGATATGGGTCCACTCATCATCAGCAGGGCTGTAACACTCTGCAGAGCACAGGATGCCACCTTCCCCTCTTCCTCCGACAGCATAGATACGACCCCCCATGGCACTGCAGTGGAAACGACGACGACGAACATTCATGTCTGCAAGGCGAGTCCACTTGTCAAAGCGAGGGTCATATCGCCGCACTGAAGCGGTGGCCTCTTCTTCGTGGCTGCTGTTGAACCAGGAATTTTGTCCCcCTATGATATATAGGTAGTCATTGAGCACTACAGCACAATGATTATACATCCCCTCCACACGAGTAACCGTTTTCCATGAACCCGGTTTCAGGTGCTCACCCCCACTCAATACCTGTATCTCCCTGCACTCTTGGCTGCCTGTGGTTTTACCACAAGTTGCCAGCACCCCTTTTCGCGATGACCTTATTTTGAACCACTTCTGATATGGACTGTCAATCTGAAACCGAAGATCTTCTTTAGACATCATCTGAATGTACGTGTCACCCTTTGGGACAGCCTTCACCAGCTCCACAGAGTCTCTGAAGTCATCCTCGGACAAGCACTCTGGAGGGAAGATCAGACCCAAGCGGACTTCTTTCATCAGGTCTTCCAGGTAGGGCAGCCTGTTGTCCAGGTCGTAATTTAACCATTTCAGCGACAGCTCCAGGATGGCTCTCTCGCTGACCTGCGGACTGACGTCATCTCTCTCCAAAACACCCAAAACGGCGTCCCCGTCCACCTGCAACAGAGAGGTCTGGGCCGTTTCCAAAATCACATCTAGGTTTTGTGAAATGAACGAGAAACACTGCAATTTTAAAGAGACCAGGTCGTATTTATCGGACAGGCACAGGATGTCGCTGAAATTGTCCACCCTCAGGGACTGCTGCAGCAGCTCGGCGCAGCACTGCGTGAGATGCGGGATCTGCAGGTGGGTGGAGGTGAGCAGCACGTCCTCCAGGCTCTCAAAGTCTGCGCTCAGGTGGGACGTGTAAATAAAATCCAAGGCACATTTCAGACCCGCTGCAGAGACCCCTTTTAGCTCTACCGAGTCCATGTGTTTCTCCCTCATGTCCGTTGTAAacattattctgaaataataacTTGCTGCGGCTAGGACCGACCTGTGCGCCGAAAAGGTCTCATTTCCAGCAGACAGACGAATGTCGCAAAGGCACTGGGCCTGCCACAGCTCCTGGAAACCGCGCTGCAGAGCCGAGGGGAAGTCGCGGCTGCACAGAGGGAACTGCCCCGGC

Function

GO: NA

KEGG:

id description
K14556 DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88386 lncRNA downstream 252987 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 352751 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 440316 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 508088 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 1018901 15701495 ~ 15703314 (-) True G70491
TU88566 lncRNA upstream 546442 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 611559 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 708991 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 862584 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 1265933 18003810 ~ 18004023 (-) True G70954
AMCG00014534 mRNA downstream 210164 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014532 mRNA downstream 218139 16497287 ~ 16504076 (-) True AMCG00014532
AMCG00014533 mRNA downstream 225634 16479887 ~ 16496581 (-) True AMCG00014533
AMCG00014529 mRNA downstream 264847 16451881 ~ 16457368 (-) True AMCG00014529
AMCG00014526 mRNA downstream 275247 16439295 ~ 16446968 (-) True AMCG00014526
AMCG00014540 mRNA upstream 45200 16783077 ~ 16785522 (-) True AMCG00014540
AMCG00014541 mRNA upstream 62164 16800041 ~ 16814919 (-) True AMCG00014541
AMCG00014544 mRNA upstream 88768 16826645 ~ 16955741 (-) True AMCG00014544
AMCG00014542 mRNA upstream 228915 16966792 ~ 16973783 (-) True AMCG00014542
AMCG00014543 mRNA upstream 238533 16976410 ~ 16977779 (-) True AMCG00014543
TU87063 other downstream 5059722 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5924068 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7405048 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8337991 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8563625 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11591862 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12651413 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15525290 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15859585 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15859585 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072966 False 3058 mRNA 0.47 27 NC_007120.7 20853894 ~ 20872565 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_10089124_10102162.mRNA True 4046 mRNA 0.43 26 CI01000009 10087937 ~ 10102162 (-)