RNA id: TU88472


Basic Information

Item Value
RNA id TU88472
length 1185
lncRNA type sense_over
GC content 0.52
exon number 2
gene id AMCG00014539
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16722073 ~ 16737877 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctttgtcagtgggcaaacgcacaaaatcagcaggggatcaaatacttttttctctcaatgTAGTTCATAATATAATGCAGCAGCTGCTCAATACACCACACAAAACGCAGGGTGACCATTTAcatcaggggtgtcagactccagtATCTCCCTGCACTCTTGGCTGCCTGTGGTTTTACCACAAGTTGCCAGCACCCCTTTTCGCGATGACCTTATTTTGAACCACTTCTGATATGGACTGTCAATCTGAAACCGAAGATCTTCTTTAGACATCATCTGAATGTACGTGTCACCCTTTGGGACAGCCTTCACCAGCTCCACAGAGTCTCTGAAGTCATCCTCGGACAAGCACTCTGGAGGGAAGATCAGACCCAAGCGGACTTCTTTCATCAGGTCTTCCAGGTAGGGCAGCCTGTTGTCCAGGTCGTAATTTAACCATTTCAGCGACAGCTCCAGGATGGCTCTCTCGCTGACCTGCGGACTGACGTCATCTCTCTCCAAAACACCCAAAACGGCGTCCCCGTCCACCTGCAACAGAGAGGTCTGGGCCGTTTCCAAAATCACATCTAGGTTTTGTGAAATGAACGAGAAACACTGCAATTTTAAAGAGACCAGGTCGTATTTATCGGACAGGCACAGGATGTCGCTGAAATTGTCCACCCTCAGGGACTGCTGCAGCAGCTCGGCGCAGCACTGCGTGAGATGCGGGATCTGCAGGTGGGTGGAGGTGAGCAGCACGTCCTCCAGGCTCTCAAAGTCTGCGCTCAGGTGGGACGTGTAAATAAAATCCAAGGCACATTTCAGACCCGCTGCAGAGACCCCTTTTAGCTCTACCGAGTCCATGTGTTTCTCCCTCATGTCCGTTGTAAacattattctgaaataataacTTGCTGCGGCTAGGACCGACCTGTGCGCCGAAAAGGTCTCATTTCCAGCAGACAGACGAATGTCGCAAAGGCACTGGGCCTGCCACAGCTCCTGGAAACCGCGCTGCAGAGCCGAGGGGAAGTCGCGGCTGCACAGAGGGAACTGCCCCGGCCCCCCGTGAGAAGCCATGTTGGCTGGCTGTTGTGAAAACGAGGAGCGGGGGATCTTGGGACTCGGGATTCCTTCGCAATGCCTTCTGGGATTTGTAGTTTTAGTCAGTTCTGCACGTCTGTATTTTAGGTTGTTGCTTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88386 lncRNA downstream 252845 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 352609 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 440174 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 507946 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 1018759 15701495 ~ 15703314 (-) True G70491
TU88566 lncRNA upstream 560769 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 625886 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 723318 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 876911 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 1280260 18003810 ~ 18004023 (-) True G70954
AMCG00014534 mRNA downstream 210022 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014532 mRNA downstream 217997 16497287 ~ 16504076 (-) True AMCG00014532
AMCG00014533 mRNA downstream 225492 16479887 ~ 16496581 (-) True AMCG00014533
AMCG00014529 mRNA downstream 264705 16451881 ~ 16457368 (-) True AMCG00014529
AMCG00014526 mRNA downstream 275105 16439295 ~ 16446968 (-) True AMCG00014526
AMCG00014540 mRNA upstream 59527 16783077 ~ 16785522 (-) True AMCG00014540
AMCG00014541 mRNA upstream 76491 16800041 ~ 16814919 (-) True AMCG00014541
AMCG00014544 mRNA upstream 103095 16826645 ~ 16955741 (-) True AMCG00014544
AMCG00014542 mRNA upstream 243242 16966792 ~ 16973783 (-) True AMCG00014542
AMCG00014543 mRNA upstream 252860 16976410 ~ 16977779 (-) True AMCG00014543
TU87063 other downstream 5059580 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5923926 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7404906 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8337849 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8563483 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11606189 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12665740 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15539617 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15873912 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15873912 32597462 ~ 32619149 (-) False G73127

Expression Profile