RNA id: AMCG00014542


Basic Information

Item Value
RNA id AMCG00014542
length 2795
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00014542
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16966792 ~ 16973783 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACGACACAAAGTTTCAGGAAAGTTTTGGTGGAGGAGTAGAAGTAAAGACTAATCCGGTGAGCTGGTGAAATATGACAAAGTATGGATACCAGACAATCCACTGCACCTTTAGAGCAAATGTCTGAAATGCACGGAATTCAGTcatctttgctttcgattgtttagATCCTTTGAGGGCATAACACGATcgttttgaatgtctttgatTGGGCGACGCTTGTGCATTTAGATCCCAGGCTCACAATAGTAGGTTGCTACAAGGTTGTGGgcacgttgtgtgttagctgggtttaTTGTGTCCCTTCAGCATGTCAGTGGATGAGGAGAGGAGGCTGGGTGGCTGTGACTCGGGCAGCCCCTTCCCATTATCCAGTAGCAGGAACTCCACAGCAAATGGTCATCCTCGGCTTGGCGACTCCAGGACGGTGTGCTTCGTGTGCAAACGCTTTTACTGCGACCCAAAGATCTTGCCCTGCCTGCACACTTTCTGCTCCGAGTGCATCCGCCAGCTGGAGCCGTTCTCCGCGTCGGCACCGGGCGGGCCGGGTTCTGCGCCCCGGGCACCCAGCATCCGGGAACCGGCCTCGATCACGGTACTGTGCCCGGTGTGCGACTCGGAGGTGGACTTGCCACACGCCGGGGTGGAGGGCTTGACTACAGACCACCTGGCCGTGAGCGACGTTTTGCTGGAAAGTCTGCGGAATGACGAGTGCGAGCTGCTGTGCGATCTGTGCAGCGAGGGGGAGGCCGAGAGACGCTGCGCTGTGTGCAGTGCCAACCTGTGCCAGTTCTGCTGCCAAGCGCACAGGAGACAGAAGAAGACGTCTTCTCACTCCATGGTGTGTCTCCAGGACCTGAAGACCTGCGGGCGTGTGGTGAAGCCTGTGTTGTGCCGGCTGCACCCCAGTGAGGAGCTGAGGCTGTTCTGCGAGACGTGCGACCAGCCTGTGTGCCGCGAATGCGCAGTAACAGGCCATCGGGACCATCTGTGTGATTACACCACCAATGTCATCCACAAGCACGGGGACTATATCAGAGAGTTGGCAAAGAATGTCCAGCCCCATGTGGGCAAGCTGGAGGCCGCCCTGAACAACATCGAGTGCGCCCAGCACACCGTGCAGGCCCGCGCACAGGCCGTGGCCGAGGAGATCCAGACTTTCATGCAGGGGTACATGCGAGCTGTGCAGACGCACTGCCACGGCCTCCTCCGGCAGCTGGAGGAGATCCGTGTCCAGAAGAAGAACCAGCTTCACCTGCAGATGGTCCAGCTGGAGCAGGTCCTGTCCGACGTCAAGACCGGGGTGGACTTCACAGAGCGGCTGCTCACCGACGGCTCGGACGTGGAGATCCTGACAGCCAAGGGTGTGACGGTAAGACGTCTGAAGAGGCTGGGGGAGGTGGGGTACAACGTCCACCCCGTCACCGACGATGGTATCAGCTTCCTCCCCCAGGAGAAGGCCGGGCAGACTGAGGGGTACCAAGTGTTTGGCATGATCTATGCAAGGGCTGTCGATCCAAATAAGTGTGTCATTCAAGGCGAAGCACTTCAGGTGGGCCGCCAGGACAACCCCAGTGAGTTCACCGTGATCTGTAAAGATTCTGCTGGGGAGCAGATGAACAAAGGAGGGGAGACTGTCCGGGTCAGCATTGTCCACAAAACCAAGAAAGACTGTTCCACAAAGCCTACAGTGGTGGATAATAACGATGGTTCATATAGCGTGTCTTACACACCTGTGGAGCCGGGGGCACATACTGTATGGGTGTGTGTTAAAGGACAGCATGTCAAGGGCTCTCCCTTCATGGTGGCTGTGAAGAGCAAGGTCCGTCGGCACCGCGGTACATTTCACTGTTGCACGTTCTGCTCAAGCGTGGGACTGAAGGAAGCGCGCTGTGGCTGCGGGGGGACAATGCCAGGTGGGTACCAGGGCTGTGGCCACGGACACAAAGGGCATCCTGGGAAGCCCCACTGGTCCTGCTGTGGAAATGTGAGTGAAGTGTCTGAGTGTACTGGCTGCAGCGCCGGACCAGTCTCCCCGCGCGGCATCTTCAGGACTGTGGCTCTCTGAGGGAACGGGGCCTGTTTTGGACTATGCATCTTGTCACCCTCATGAGTTTGCCTTTGCACTTGCATGCCTTCAGGTTCTGCAGGCAGAGTTCCACAGAGTACATATGACCACCCTTGTGTAAAtagagaataataaaaacagacatgaTCCAAATTTAATCTGTGTTAATCTTGTTGAAAGAAGAGGCATGCTACTTCTTAGGCAAGGCAGTGTTATACTAGACATACGTTTACACCTATGAGTTTATGTGCCAGGATCCTGGTTATTTATCAAGATCTATTGAGTCTTTACTTGCtaccatttaatttttttaaagcctaGGTATTTCTTCTATATCAATCTAGTAAAGTTTTCAGTTGTtcagattttacatttaaagtgtaTTCTTGATAAAAAGATCTATGCATAATACCTGAATTTacacaaacataatatttatCTTCTAAAAAACACTATCTAGTTTAATACACTAgaattatttgttaatttgaacCTGCTTTCTGCCACATCATTTGGATATGCAAACACAAAGATGAATTCATGCATTAGTGTATGACTTCACAGGTCTGTATTTAGGGGTATTTTTAGTTTCACAGCATATTGTTTTCCATAATACTTatcacaatgttgtttttttgtgctttagTATATAATGAATGAACACATAAGTACactacatttatattgtatatctTTAAAACTGTTAAGTGACCTAAGTGATTTCAgg

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12021 TRIM45; tripartite motif-containing protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 243242 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 497564 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 597328 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 684893 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 752665 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 310536 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 375653 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 473085 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 626678 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 1030027 18003810 ~ 18004023 (-) True G70954
AMCG00014544 mRNA downstream 11051 16826645 ~ 16955741 (-) True AMCG00014544
AMCG00014541 mRNA downstream 151873 16800041 ~ 16814919 (-) True AMCG00014541
AMCG00014540 mRNA downstream 181270 16783077 ~ 16785522 (-) True AMCG00014540
AMCG00014539 mRNA downstream 228915 16722215 ~ 16737877 (-) True AMCG00014539
AMCG00014534 mRNA downstream 454741 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014543 mRNA upstream 2627 16976410 ~ 16977779 (-) True AMCG00014543
AMCG00014545 mRNA upstream 17386 16991169 ~ 17002661 (-) True AMCG00014545
AMCG00014546 mRNA upstream 58747 17032530 ~ 17035481 (-) True AMCG00014546
AMCG00014547 mRNA upstream 91886 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014548 mRNA upstream 146421 17120204 ~ 17126776 (-) True AMCG00014548
TU87063 other downstream 5304299 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6168645 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7649625 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8582568 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8808202 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11355956 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12415507 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15289384 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15623679 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15623679 32597462 ~ 32619149 (-) False G73127

Expression Profile