RNA id: AMCG00014544


Basic Information

Item Value
RNA id AMCG00014544
length 2245
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00014544
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16826645 ~ 16955741 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGCTCTCTCCGCGCCTCTGACTTGAGAGATACTCCCTAACTTCCCCCGCCCGGTTGTCGATGGGATGCTGGAGGACTGAGAGGAGGAGCAGCTGCAGTAACAACATCTCTGATGGAGGGATGCCGTTTTAATGAAatcaggaggaaaaaaagatcGCCGTGCCTGCCTAGTAGTAATCTAGACTTGGAAATACATGACATGCAGCCGGTTGCACCGGTTCCAGGCATGAACCTCCCCGGAACAAGCATCGGCAGCTCTGACCCAGCACCCCGGAGTCGGGCGATGTGCGGGCTGTGATCGGAAAAGAAAGCGCTCCGTCAGCCCCGGCGCCTCAGCGATGACTGGGGGGAGAAAAGCGCAGCAActgtaacaaaaaaagaaatgcaaggaCTGTTTTAACAGAGATCGGTCTGGCGCCGCAGCTGTGTTCAAATCTCCAGTTTGCCGTCAGTGCATTGAACGCAGCGGGGTCTCCTATCGCTGCTGCTGAGATCAGGCCTGGATGAGAAGCAGGAGTTGTTGAGAGATTCACCGCAAGGCATGATTTATTTCATCATAATGTAACGGGACATTTTCCCCGGCTCCCGATGATCGTCCACTGTCCTGTGCGAGACATGCCCAAGCCAGTGTTGCATTTCCTGCAAACCGTCCAAGATGTGACCGTCTTCTGATGTTTTAGGatggttttttgtttgttttgttaagacTACTTTGGGGGCGATAGCGCTTGATTTTTAAACAGTACTGATGTGGTATGATTATTGATCTGTTGAGTTTTAACTCTTGCTCCGGACGACCACTGAGCATGGATGGGAAGGACAATATGATTTGCACGAATATACCCTCGTCAATCAGCTGAAGAGGAAACGTGTCGTCgcttaagataaataaatgcaacttGTTTGAACATCTGCCTGCCGAAATGAGATAGCCTAATACATACGGTATAAAGGAAACCCTATAAACTGTAGTTATAGCACCAATAATAAAAACCAACATGACCACCCCAGCTTTGTTGCCCCTCTCTGGAAGAAGGATACCCACCTTATCTCCCGGCACTGCATCATTCCCTCACCACAGGGCCACCTTGCGCCTCTCTGAGAAGTTCATCCTGCTCCTCATCCTCAGTGCCTTCATCACTCTGTGCTTTGGAGCTTTCTTCTTCCTCCCAGACTCTTCCAAGCACAAGCGCTTCGACCTGGGGTTGGAAGACGTCCTAATACCCCACATTGACTCCAGCAAGGAGGGGAAGCATCCTGGAGGGCAGATCATCCACGGTCAAGGAGGGCATGATGAGCATCGCCACAGGAGGGCCACAGGAGAGCTGTTCAAAGAGCAGGCAACTGcgagggaggaagaggagagctTGAGGAGCAAGATCCGTGCCGATCATGAGCGGGTGCTGGAGGAGGCCAAGGAGAAGCTCATGAAGTCCCGGGAGGAGTTGAGGGCCGAGATCCAGACCGAGAAGAACAAGGTGGCTCAGGATCTCAAGAAGAAGGACAGCAAGCAGCTGCCCCCCGTGCCCATGCCCAAGCTGGTGGGCATCCGTGACGGTGATCCGGGAGACCCCGACGTCAAGGAGAAACGCAACAAGATCCGAGAGATGATGAAGCATGCTTGGGACAGCTATAGACAGTACGGGTGGGGGCACAATGAACTCAAACCACTTTCCAAGAAAGGACATTCCACCAATATCTTCGGAAATTCCCAAATGGGAGCAACCATCGTTGATGCTGTAGACACTCTCTACATCATGGGCCTTCATGACGAATTCAAAGATGGACAGGAATGGATTCAGCAGAATCTGGATTTTAGTGTGAATGCTGAAGTGTCTGTCTTTGAAGTGAATATCCGTTTTATTGGTGGACTGCTGGCAGCCTATTACTTGTCTGGAGAGGAGgtcttcaaaatcaaagcCGTCCAGCTGGCGGAGAAGCTGCTGCCAGCGTTTAACACCCCGACTGGCATCCCTTGGGCAATGGTCAACCTGAAGAGTGGCGTGGGTCGAAACTGGGGCTGGGCGTCTGCAGGCAGCAGCATCCTGGCCGAGTTTGGCACTCTGCATTTGGAGTTCGTCCACCTCACCTACCTGACTGGAGACCCTGTCTACTACAACAAAGTTATGCATATTCGAAAGCTGCTGCAGAAAATGGACAGGCCAAACGGGCTTTATCCGAACTACCTGAACCCAAGAACAGGACGCTGGGGACAACGTGCAGAGGCTGATGGGATTGTGTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 103095 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 357417 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 457181 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 544746 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 612518 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 328578 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 393695 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 491127 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 644720 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 1048069 18003810 ~ 18004023 (-) True G70954
AMCG00014541 mRNA downstream 11726 16800041 ~ 16814919 (-) True AMCG00014541
AMCG00014540 mRNA downstream 41123 16783077 ~ 16785522 (-) True AMCG00014540
AMCG00014539 mRNA downstream 88768 16722215 ~ 16737877 (-) True AMCG00014539
AMCG00014534 mRNA downstream 314594 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014532 mRNA downstream 322569 16497287 ~ 16504076 (-) True AMCG00014532
AMCG00014542 mRNA upstream 11051 16966792 ~ 16973783 (-) True AMCG00014542
AMCG00014543 mRNA upstream 20669 16976410 ~ 16977779 (-) True AMCG00014543
AMCG00014545 mRNA upstream 35428 16991169 ~ 17002661 (-) True AMCG00014545
AMCG00014546 mRNA upstream 76789 17032530 ~ 17035481 (-) True AMCG00014546
AMCG00014547 mRNA upstream 109928 17065669 ~ 17086786 (-) True AMCG00014547
TU87063 other downstream 5164152 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6028498 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7509478 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8442421 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8668055 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11373998 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12433549 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15307426 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15641721 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15641721 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_10149267_10242850.mRNA True 1935 mRNA 0.53 13 CI01000009 10149267 ~ 10242850 (-)
rainbow trout (Oncorhynchus mykiss) TU364789 True 227 lncRNA 0.42 2 NC_048568.1 13195662 ~ 13195910 (-)
mexican tetra (Astyanax mexicanus) TU364789 True 1357 TUCP 0.49 3 NW_019171935.1 71680 ~ 75889 (+)