RNA id: AMCG00014552



Basic Information


Item Value
RNA id AMCG00014552
length 536
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00014552
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17328913 ~ 17332815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCAAAATGTTATCTATGGATTATTAAACGCAGAAATAACTTTGAAACCAATCAGCAGTGGATTTTTAGAAGAAATTATCTGGAAACATAATATGGATAAGGTTGCAGAGTATGACCAAGATCaacagattttgtattttgcgGAATACAACGGAAGGACAACCCTGGACATAAAAAACGGATATCTTACAATCAAGGCTCTCACAAAGAAAGACAGCGGAAAATACAGCATAAATGTGCAGATAAGTGGCAAGTTACAAACCCTGCAGTCGTATAACTTAATAATCCTTGAGCATGTCCCAAAACCAACAGTCACTTGTAAGGCTGATGATCTTAATGCAACTCTGCGCTGTCTTGCCCAAACAAGCTATAATACTCAGTACAGATGGGAAGGACCACAAAACCAAGAGCTTTCTGGATCAGAGTTGCCGATCAAGAGAGAGGGGAGCCAGCACTCAGAGTACACGTGTATTGTCAGTAATCCTGTGAGTGAGAGCAGGAGTGAAGTTTTTCATGCTGAACACTGCTTCCCCTCA

Function


GO: NA

KEGG:

id description
K06492 CD58, LFA3; CD58 antigen

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88575 lncRNA upstream 11357 17316253 ~ 17317556 (+) True G70883
TU88555 lncRNA upstream 75242 17250319 ~ 17253671 (+) True G70865
TU88535 lncRNA upstream 155851 17132063 ~ 17173062 (+) True G70846
TU88522 lncRNA upstream 230949 17028960 ~ 17097964 (+) True G70835
TU88448 lncRNA upstream 595276 16730878 ~ 16733637 (+) True G70776
TU88591 lncRNA downstream 16621 17349436 ~ 17350952 (+) True G70897
TU88599 lncRNA downstream 70696 17403511 ~ 17453367 (+) True AMCG00014553
TU88604 lncRNA downstream 85624 17418439 ~ 17487050 (+) False AMCG00014553
TU88613 lncRNA downstream 157011 17489826 ~ 17490607 (+) True G70908
TU88649 lncRNA downstream 317956 17650771 ~ 17651002 (+) True G70938
AMCG00014536 mRNA upstream 563361 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 597044 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 609176 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 717252 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014531 mRNA upstream 750756 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014553 mRNA downstream 31983 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 446750 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 616745 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 705293 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014563 mRNA downstream 737719 18070534 ~ 18080340 (+) True AMCG00014563
TU88385 other upstream 859800 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1196111 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1649125 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1649125 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2972045 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 70696 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 939039 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 5522527 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 10502688 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 10535888 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile