RNA id: TU88599


Basic Information

Item Value
RNA id TU88599
length 2965
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00014553
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17364798 ~ 17487050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttaaACTTGAcaaattttttttattacactgttaAAAACGTGTATAAAATTGGTCCTGCTCCAGAACAAAGGCACAGAATGTCTTGGTTCCCCATCTCAGATCTCGGAGTTTTctaaaaaacacatctgaagtTACGGAAGTTAAAAGTCAGAGCAGCAAGACTATCATGCATGGAATGGTGTGATGAACAGTGATGGTTTAATAGTacgtctctctctccacccaACCTGAAAAGACAGATGAGGAAGTTAGAATTAGTTTTAAcccaagaacaaaaacaatggaaggggaggaggggggtctTAAATCCAAAACTCAGAACTACTACATTTCAGCGGTTAATAAggagcattttaaaacaagcctTAAAACTAGTTTAAAATTGAACTGGTTATAAACAATACCAAAGCTAAAAGGCTACTTTAGCTCTAAAAGATTATTCTACATAAATTCACTGCTACCTTCTCCAACAATGGAGAATACAAGAGCTACTAACAGGGAAATCCAGTTAAAGCACAGGCATGAGAAACTAGCAGTTGTAGACCTACTTGAAATTACTGCAACAAGctataaatacaattcttaCCCCCTGGGCTGCGTCGGAGGATAAGTTTTCTgatttcatcataaataaaaataaggagGGAGTAAGGGAAAGCGCAGAACCACCAGTTTGGTCTAAAGAggggtgggggaaaaaaataaacagttcaatttcaaaattagTGGCACCATATACACTGAAGCATCTCAAGGcacagcacaatttaaaaacctAAAGTTAACATTAACTATACAAAATTTGTACTTCAAATAGTCAAACAAGATTTAAAAAGGGGTATAGATTGCTCCAATATCACTCAGTAAAGAATAGAATTGACATCAAATGACTAAAACCACCTCAGTGACCTGACTAGAGACAATGTACAACAGGGTCTCCAACCGATAAATGTATACGGTAGTCAAGCGCAAAGCTTTAGGATTTGGACATTGCAATGTTTCAGACTATTCTGTATATACATGTTGGGtaccaagtaaaaaaaaaaaaaagtcaattaacATTTAGTATTGTGTTGGATCTCCAGAATTCCTTCAACTGAGGTAGTGTACTGTGGGTAAGGTCATCAAAAGAATTTCCCTAAATCTCATCATGTCCATCAGCAATACTATGAACAAACCCGTAAACAGGCCCAACCTTAACGTCCCACATACAGTTCAGTCCACAATGTTTGAAGTTTATAGGTTATGCATCAAAATTGCCATTAtctaatacaaattacaaacattaaCTTACTTTAGGGGGTACATTCTGAGGGCAATGTCCATTCCAGGGCAGTAAGACAGGAAGGCAGCCAGAGCAGTTTCTTCAAACAATCCAAATATGAGGATCTTGTTCCTGGGAATAAAAATGTCGATAGTGCCAAATGCTTCCAAAAAAGCCAAAAGTCAAATTAACTCCCACCTTCCTTTGcaaatacataagaaaactAAACTACTGCATGTCAGATTTAAACCAGGTTTTAGGGaggtttcattttattcacaAGGTTCTGCTTCATTACTCTTGTTGCAGATGGGCTACAAGATACGTACTTCATTCCCTGCTGGAACACAGAGTTCCTCCTCGTCTTACAGATGATCAAGTCAGTCCACTGCACAATCACAATGCTGGTAAAGAAGGCTGTGTGGCAGGTAAACTCAACAATCTTTCTCTGTTCATAggtctaataaaaaaaaaaaaagatacaaaaggGGTTAGTTACAAAAGGCCACCCCTTTTCCATCACTTTAGCTGAACTAATCTGGTTTCAGAGAAAGACTGTTCAGAATACTCACCCACTGCTGTCCATAGCTGTCCTCAacatcatttacatatttattatccCAGTCAACACGGATGCCAAGTAGTCTTGATGGCAGGAAACCATTCTCGGCAAGAATGACAAAATAGGTGAAAAAGCCTCCCAGAGCCTGGATCATACCTGAAGACACAAATTTCCTGGTTATTCTTGAACTAAATTTTCTCCCCTCTTCCAAGCGAGAATCTTAAACTAGTGCTTGGTCATAAAATACTGCCCCCACATGCCACCAGTTAAGACACTTACCAATTTGACCATAAGCCATACTGATCAGCCTCTCATTCACCAGTTTGTCCGTTTTGGGATTTCTGGGCTGTCTCTTCATGATGTCGCTCTCTGCTTGTTCATAAGCCAGGGAGATAGCCGGAACCTtgcatagattaaaaaaaaagtaacaaattaaCCCCCCCCACAGATAATGACATCATTCTGGACCATGCATACAGTTTGATCGCTATTTAAACCTTCAAAATAGGGAGATTTCTTGAATACTACAAGTCAAAGCCACATGCTCACCATGTCAGTACCCAAGTCAATGCAAAGAATGGTGACTGTTCCCAGGGGCAGAGGGATGCTGGCAATGATGAAAAGGAGGAAGGGTGTGATCTCAGGAATGTTACTGGTCAGGGTGTAGGCAATGGACTTCTTCAAGTTATCAAAGATCAGACGGCCTATGGAAAACAGAAGTAAGGGGTGTAAACAATGCACTGCAAAATACTACATTCATTTAATCATAATCCAACAAGTTTCCAGACTATTTCATCAACTTGCTTTACCTTCTTCTACACCAGTCACAATGGAAGCAAAGTTGTCATCCAGAAGGATCATGTCAGCAGCCTGTTTGGACACATCTGAGCCCGCAATACCCATGGCAACACCAATATCGGCTTTCTTCAGGGCAGGAGAGTCATTCACACCATCACCAGTCACAGCTACAATAGCaccctGCCTGTTTGGACACATCTGAGCCCGCAATACCCATGGCAACACCAATATCGGCTTTCTTCAGGGCAGGAGAGTCATTCACACCATCACCAGTCACAGCTACAATAGCaccctgaaaatgaaaagtgttgATTAACAAGCTTTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88591 lncRNA upstream 52559 17349436 ~ 17350952 (+) True G70897
TU88575 lncRNA upstream 85955 17316253 ~ 17317556 (+) True G70883
TU88555 lncRNA upstream 149840 17250319 ~ 17253671 (+) True G70865
TU88535 lncRNA upstream 230449 17132063 ~ 17173062 (+) True G70846
TU88522 lncRNA upstream 305547 17028960 ~ 17097964 (+) True G70835
TU88613 lncRNA downstream 36459 17489826 ~ 17490607 (+) True G70908
TU88649 lncRNA downstream 197404 17650771 ~ 17651002 (+) True G70938
TU88777 lncRNA downstream 1011852 18465219 ~ 18468335 (+) True G71036
TU88779 lncRNA downstream 1023676 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 1235181 18688548 ~ 18692633 (+) True G71136
AMCG00014552 mRNA upstream 70696 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014536 mRNA upstream 637959 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 671642 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 683774 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 791850 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014560 mRNA downstream 326198 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 496193 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 584741 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014563 mRNA downstream 617167 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014569 mRNA downstream 870903 18324270 ~ 18332414 (+) True AMCG00014569
TU88385 other upstream 934398 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1270709 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1723723 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1723723 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 3046643 14336858 ~ 14356868 (+) False AMCG00014461
TU88725 other downstream 818487 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 5401975 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 10382136 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 10415336 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 10849006 28302373 ~ 28304073 (+) True G72175

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU144361 True 2522 lncRNA 0.35 3 NC_035908.1 29052531 ~ 29055183 (+)