RNA id: AMCG00014554


Basic Information

Item Value
RNA id AMCG00014554
length 3710
RNA type mRNA
GC content 0.46
exon number 20
gene id AMCG00014554
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17418457 ~ 17432186 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAACGTGCCGACGTCACGCTCAAGGCGGCCGGTATATAAGCGCTGGCCGCGCCGGAGCGCCGAGGAGCTGCTGCGCGTCCGGGGTGACACGTGTGGATTGAGCACGGCCAGGCGCGGAGAAGAAGGACGAGACAAGTATGAGTTGGCTGCGACATCGGAGCAGGGGGGGAAGAAGGCCAAGAAGGCAAAGAAGGAAAGGGATATGGATGAACTGAAGAAGGAAGTAGACTTGGATGATCACAAGCTCACATTGGATGAAATTAATGTGAAGTATGGAACGGATCTCAACCGGGGATTAAGTGTTGCCCGTGCTGCTGAGATTCTGTTAAGAGATGGCCCCAATTCTCTCACTCCTCCTCCCACCACTCCAGAATGGGTCAAGTTCTGTAAGCAGATGTTCGGTGGATTCTCCATGCTTCTCTGGACTGGAGCCCTCCTCTGTTTCTTGGCTTATGGAATCCAGTCTGTCATGGAGGAAGAACCTGTTAATGACAATCAAGCCCTGGTTATCAGAGATGGAGGGAAGAAAAGCATAAATGCACAAGATGTGGTTGTTGGAGACCTGGTTGAAGTAAAGGGAGGAGACCGAATACCTGCTGACTTGAGAGTCATCTCTGCTCAGGGCTGCAAGGTTGACAATTCTTCCCTCACTGGGGAGTCTGAGCCTCAGACCAGATCGCCTGAATTCTCCAATGAAAACCCTCTTGAGACCAGgaacattgcttttttttctacCAACTGTGTTGAAGGCACCGCTCGTGGCATTGTCATCAACACTGGTGACAGGACTGTGATGGGACGAATTGCTACTCTTGCATCTGGCCTGCAAGTTGGGCGCACTCCTATCTCCATTGAAATTGAGCACTTCATCCATCTCATCACTGGTGTGGCTGTCTTCTTGGGAGTTAGCTTTTTCATCCTGTCGCTGGTCCTTGGCTATACCTGGCTGGAGGCTGTCATCTTCCTCATTGGAATCATTGTGGCCAATGTACCCGAGGGTCTCCTGGCTACCGTCACTGTGTGTCTGACTCTCACAGCAAAGCGTATGGCCCGTAAGAACTGCCTTGTGAAGAATCTGGAAGCTGTGGAGACGCTGGGGTCCACCTCCACCATTTGCTCTGATAAGACTGGAACCCTGACTCAGAACAGAATGACTGTGGCCCATATGTGGTTTGATAACCAGATTCATGAAGCTGACACCACTGAAAACCAGAGCGGCACCTCCTTTGACAGAAGCTCCCTAACCTGGGCTGCTCTTGCCCGTGTAGCTGGCTTATGCAATCgtgctgtgtttctgtcttcACAAGACAACGTGCCAATTCTTAAGAGAGATGTTGCTGGTGATGCCTCGGAGTCTGCCTTGCTGAAATGTATTGAGCTGTGCTGTGGATCTGTGAAAGAGATGAGGGAGCAATACCCTAAAGTGTCAGAAATCCCTTTCAACTCCACTAACAAGTACCAGCTTTCTATCCACAAGAACGCAAACCCATCTGAAAGCCGATACCTTCTGGTGATGAAGGGAGCCCCGGAGAGAATTCTTGATCGTTGCTCCACCATTCTGATTCAGGGCAAGGAACAGCCTTTGGATGATGAGATGAAGGATGCTTTTCAGAATGCCTACCTTGAGCTTGGTGGCCTAGGAGAGAGAGTGCTTGGTTTCTGCCACTTCTTCCTCCCTGATGACCAGTTCACAGAAGGATTTCAGTTTGACATAGATGAGGTGAACTTCCCAACTGAGAATCTGTGTTTCGTTGGCCTGATGTCCATGATTGACCCCCCTCGTGCAGCTGTGCCTGATGCAGTTGGCAAAGATGCCAAGGCCTGTGTAGTTCATGGCAGTGACCTGAAGGATATGACCCCAGAACAGCTGGCTGAGATCTTGAAACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCACAGCAGAAGCTGATCATTGTGGAAGGCTGTCAGAACCAGggtGCTATTGTAGCTGTGACTGGTGATGGTGTGAATGACTCTCCTGCCCTGAAGAAAGCCGATATTGGTGTTGCCATGGGTATTGCGGGCTCAGATGTGTCCAAACAGGCTGCTGACATGATCCTTCTGGATGACAACTTTGCTTCCATTGTGACTGGTGTAGAAGAAGGCCGTCTGATCTTTGATAACTTGAAGAAGTCCATTGCCTACACCCTGACCAGTAACATTCCTGAGATCACACCCTTCCTCCTTTTCATCATTGCCAGCATCCCTCTGCCCCTGGGAACAGTCACCATTCTTTGCATTGACTTGGGTACTGACATGGTTCCGGCTATCTCCCTGGCTTATGAACAAGCAGAGAGCGACATCATGAAGAGACAGCCCAGAAATCCCAAAACGGACAAACTGGTGAATGAGAGGCTGATCAGTATGGCTTATGGTCAAATTGGTATGATCCAGGCTCTGGGAGGCTTTTTCACCTATTTTGTCATTCTTGCCGAGAATGGTTTCCTGCCATCAAGACTACTTGGCATCCGTGTTGACTGggataataaatatgtaaatgatgtTGAGGACAGCTATGGACAGCAGTGGaccTATGAACAGAGAAAGATTGTTGAGTTTACCTGCCACACAGCCTTCTTTACCAGCATTGTGATTGTGCAGTGGACTGACTTGATCATCTGTAAGACGAGGAGGAACTCTGTGTTCCAGCAGGGAATGAAGAACAAGATCCTCATATTTGGATTGTTTGAAGAAACTGCTCTGGCTGCCTTCCTGTCTTACTGCCCTGGAATGGACATTGCCCTCAGAATGTACCCCCTAAAGTAAGttaatgtttgtaatttgtattagaTAATGGCAATTTTGATGCATAACCTATAAACTTCAAACATTGTGGACTGAACTGTATGTGGGACGTTAAGGTTGGGCCTGTTTACGGGTTTGTTCATAGTATTGCTGATGGACATGATGAGATTTAGGGAAATTCTTTTGATGACCTTACCCACAGTACACTACCTCAGTTGAAGGAATTCTGGAGATCCAACACAATACTAAATgttaattgacttttttttttttttacttggtaCCCAACATGTATATACAGAATAGTCTGAAACATTGCAATGTCCAAATCCTAAAGCTTTGCGCTTGACTACCGTATACATTTATCGGTTGGAGACCCTGTTGTACATTGTCTCTAGTCAGGTCACTGAGGTGGTTTTAGTCATTTGATGTCAATTCTATTCTTTACTGAGTGATATTGGAGCAATCTATACCCCTTTTTAAATCTTGTTTGACTATTTGAAGTACAAATTTTGTATAGTTAATGTTAACTTTaggtttttaaattgtgctgtgCCTTGAGATGCTTCAGTGTATATGGTGCCActaattttgaaattgaactgtttatttttttcccccaccccTCTTTAGACCAAACTGGTGGTTCTGCGCTTTCCCTTACTCCctccttatttttatttatgatgaaatcAGAAAACTTATCCTCCGACGCAGCCCAGGGGGTtgggtggagagagagacgtACTATTAAACCATCACTGTTCATCACACCATTCCATGCATGATAGTCTTGCTGCTCTGACTTTTAACTTCCGTAacttcagatgtgttttttagAAAACTCCGAGATCTGAGATGGGGAACCAAGACATTCTGTGCCTTTGTTCTGGAGCAGGACCAATTTTATACACGTTTTtaacagtgtaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88592 lncRNA downstream 67485 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 133881 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 694907 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 949229 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 1048993 16366124 ~ 16369464 (-) True G70689
TU88625 lncRNA upstream 14682 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 168275 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 571624 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 582640 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 897011 18329197 ~ 18331100 (-) True G71016
AMCG00014551 mRNA downstream 94836 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014549 mRNA downstream 139010 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014550 mRNA downstream 177383 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014548 mRNA downstream 291681 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014547 mRNA downstream 331671 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014555 mRNA upstream 15315 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014556 mRNA upstream 52664 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014557 mRNA upstream 123481 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014558 mRNA upstream 140717 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014559 mRNA upstream 157081 17589267 ~ 17621151 (-) True AMCG00014559
TU87063 other downstream 5755964 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6620310 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8101290 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9034233 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9259867 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10897553 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11957104 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14830981 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15165276 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15165276 32597462 ~ 32619149 (-) False G73127

Expression Profile