RNA id: AMCG00014555


Basic Information

Item Value
RNA id AMCG00014555
length 3255
RNA type mRNA
GC content 0.45
exon number 21
gene id AMCG00014555
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17446868 ~ 17462290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTACTGTTGCAGCAAGGACGAGACAAGTATGAGTTGGCTGCGACATCGGAGCAggggaagaaggaaaagaaggcAAAGAATGAAAGAGATATGGATGAACTGAAGAAGGATGTTGATTTCGATGATCACAAGCTCACATTGACTGAAATTAATCGCAAGTATGGAACTGATCTCAGCCAGgGCTTAACTTCTATCCGTGCTGCTGAGATCTTATTACGAGATGGCCCCAATGCTCTCACTCCTCCAGCCACTACTCCAGAATGGATTAAGTTTTGCAAGCAATTGTTTGGTGGTTTTTCAATACTGCTCTGGACTGGAGCCATTCTCTGTTTCTTGGCTTATGGAATTCAGTCTGCCACAGAGGATGAACCTGTAAATGATAATTTATATTTGGGTATTGTACTTACTGCTGTCGTCATCATCACTGCCTGTTTCTCATACTACCAAGAAGCTAAGAGCTGCAGGATCATGGACTCCTTCAAGAACATGGTCCCTCAGcAAGCCCTGGTTATCCGAGATGGTGGGAAGAAAAGCATCAATGTAGCGGAGGTTGTGGTTGGAGACCTGGTTGAAGTACTGGGAGGAGACCGAATACCTGCTGATTTGAGAATCATCTCTGCTCAGAGCTGCAAGGTTGACAATTCTTCCCTCACTGGTGAGTCAGAGCCTCAGACCAGATCACCTGAATTCTCCAACGAAAACCCTCTTGAGACCAggaatattgcttttttttctacCAACTGTGTTGAAGGCACCGCTCGTGGCATTGTCATCAACACTGGTGACAGGACTGTAATGGGACGAATTGCTACTCTTGTATCTGGTCTGGAGGTTGGGCAAACTCCTATCTCCATTGAAATTGAGCACTTCATCCACATCATCACTGGCGTGGCCGTCTTCTTGGGAGTTACCTTCTTAATACTGTCACTGATTCTTGGCTATACCTGGCTGGAGGCTGTCATCTTCCTCATTGGAATCATTGTGGCCAATGTGCCCGAGGGTCTCCTGGCTACCGTCACTGTGTGTCTGACTCTCACAGCAAAGCGTATGGCCCGAAAGAACTGCCTTGTGAAGAATCTGGAAGCTGTGGAGACTCTGGGGTCCACCTCCACCATTTGCTCTGACAAGACTGGAACCCTGACTCAGAACAGAATGACTGTGGCCCATATGTGGTTTGATAAACAGATTCATGATGCAGATACCACTGAAAACCAGAGCGgAACATCCTTTGATAAAAGTTCACTAACCTGGGCTGCTCTTGCCCGTGTATCTGGCTTATGTAATCGCGCTGTGTTTCTGTCTTCACAAGACAATGTGCCAATTCTTAAGAGAGATGTTGCTGGTGATGCCTCGGAGTCTGCCTTGCTGAAGTGTATTGAACTGTGCTGTGGATCTGTAGAAGAGATGAGGGAGCAATACCCTAAAGTTGCAGAAATCCCATTCAACTCATCTAACAAGTACCAGGGCAAGGAACAGACTTTGGATGATGAGATGAAGGATGCTTTTCATAATGCCTACCTTGACCTTGGTGGCCTAGGAGAGAGAGTGCTTGGTTTCTGCCAATGTATTCTCCCTGACAGGCAGTTCACAGAAGGATTTCAGTTTGAAGTAGAGGAGGTGAACTTCCCAACTGAGAATCTCTGTTTTGTTGGCATGATGTCTCTGATTGACCCACCTCGTGCAGCTGTGCCTGATGCTGTCAGCAAGTGCAGGAGTGCTGGAATAAAGGTTATCATGGTCACTGGTGACCACCCAATTACAGCCAAGGCTATTGCAAAGGGTGTGGGGATCATCTCTGAGGGCAATGAAACTGTTGAAGACATTGCAGCCCGTCTGAACATCCCGATTAGCAAAGTCAACCCCAGAGATGCCAAGGCCTGTGTAGTTCATGGCAGTGACCTGAAGGATATGAGCCCAGAACAGCTGGCTGAAATCCTGAAACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCCCAACAGAAGCTAATGATCGTGGAGGGCTGTCAGAATCAGggtGCTATTGTAGCTGTGACTGGTGATGGTGTGAATGACTCTCCTGCCCTGAAGAAAGCCGATATTGGTGTTGCCATGGGTATTGCGGGCTCAGATGTGTCCAAACAGGCTGCTGACATGATCCTTATGGATGACAACTTTGCTTCCATTAAGTCCATTGCCTACACCCTGACTAGTAAAATTCCTGAGATGTCACCCTTCCTGTTTTTTGTCCTTGCCAGCATCCCTCTGCCCCTGGGAACAGTCACCATCCTTTGTATTGACTTGGGTACTGACATGGTTCCAGCTATCTCCCTGGCTTATGAACAAGCAGAGAGCGACATCATGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTGGTGAATGAGAGGCTGATCAGTATGGCTTATGGTCAAATCGGTATGATCCAGGCCGTGGGAGCATTTTTCACCTATTTTGTCATTCTGGCGGAGTATGGTTTTCTGCCATCAAGACTACCTGGTATCCGTGTTGACTGggataataaatgtgtaaatgatgTTGAGGACAGCTATGGACAGCAGTGGaCCTATGAACAGAGAAAGATTGTTGAGTTTACCTGCCACACAGCCTTCTTTACCAGCATTGTGATTGTGCAGTGGACTGACTTGATCATCTGTAAGACGAGGACCAACTCACTCTTCCAGCAGGGAATGAAGAACAAAATCCTTATTTTTGGGTTGATTGAAGAAACTGGTCTGGCTGTCTTCCTGTCTTACTGCCCTGGAATGGACATTGCCCTAAGAATGTATCCCTTGAAGTAAGTTAAGGCTTAAGTTTGTCCATTGTATTAGATCACAACAATATTTTGTGATGCACAACCTATAACCTTCAAACATTGTGGACTGGACTCGATGTGGAACATTAATGttgtctttatttctttgatGCCCTTACCTATGGTAACTATGTTACATATAAGTTCTTAAAGTGATTCTGCAGATCCAGCACAATACTAAATATTCTAACATgataattgatttgttttttgactGTAAGTTAATAGTACCCTAACATACACAAATTCAGACGATtctgcatatacatacatatatctatGTTGTTCTCATGATATGGGAGTTTTGATAAATTCGTGTCTGTTTTTTGAAACcatgcacatgtttttttttctctctagaCCAAACTGGTGGTTCTGCGCTTTCCCTTACTCCTTCCTAATCTTTCTTTATGATGAAGTCAGGAAATATATCCTC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88592 lncRNA downstream 96529 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 162925 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 723951 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 978273 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 1078037 16366124 ~ 16369464 (-) True G70689
TU88648 lncRNA upstream 138171 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 541520 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 552536 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 866907 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 1201974 18664264 ~ 18664631 (-) True G71133
AMCG00014554 mRNA downstream 15315 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014551 mRNA downstream 123880 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014549 mRNA downstream 168054 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014550 mRNA downstream 206427 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014548 mRNA downstream 320725 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014556 mRNA upstream 22560 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014557 mRNA upstream 93377 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014558 mRNA upstream 110613 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014559 mRNA upstream 126977 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014561 mRNA upstream 292674 17754964 ~ 17808430 (-) True AMCG00014561
TU87063 other downstream 5785008 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6649354 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8130334 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9063277 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9288911 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10867449 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11927000 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14800877 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15135172 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15135172 32597462 ~ 32619149 (-) False G73127

Expression Profile