RNA id: TU88625


Basic Information

Item Value
RNA id TU88625
length 615
lncRNA type sense_over
GC content 0.42
exon number 5
gene id AMCG00014555
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17446868 ~ 17462290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGGGAGCATTTTTCACCTATTTTGTCATTCTGGCGGAGTATGGTTTTCTGCCATCAAGACTACCTGGTATCCGTGTTGACTGggataataaatgtgtaaatgatgTTGAGGACAGCTATGGACAGCAGTGGaCCTATGAACAGAGAAAGATTGTTGAGTTTACCTGCCACACAGCCTTCTTTACCAGCATTGTGATTGTGCAGTGGACTGACTTGATCATCTGTAAGACGAGGACCAACTCACTCTTCCAGCAGGGAATGAAGAACAAAATCCTTATTTTTGGGTTGATTGAAGAAACTGGTCTGGCTGTCTTCCTGTCTTACTGCCCTGGAATGGACATTGCCCTAAGAATGTATCCCTTGAAaCCAAACTGGTGGTTCTGCGCTTTCCCTTACTCCTTCCTAATCTTTCTTTATGATGAAGTCAGGAAATATATCCTCAGACGCAGCCCAGGAgGTTGGTTAGAGAAGGAGACATACTATTAAACCATCACTGTTCATCACACATTTCTATAGTCTTGCTGGTCTGACTTTTAATCTCCAAAACTTCAGATGTGTTTTATGGAGAACAATTCAAATCAATGGAGACGGTGAACCAAgaaattctgtgtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88592 lncRNA downstream 95896 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 162292 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 723318 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 977640 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 1077404 16366124 ~ 16369464 (-) True G70689
TU88648 lncRNA upstream 151744 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 555093 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 566109 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 880480 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 1215547 18664264 ~ 18664631 (-) True G71133
AMCG00014554 mRNA downstream 14682 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014551 mRNA downstream 123247 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014549 mRNA downstream 167421 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014550 mRNA downstream 205794 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014548 mRNA downstream 320092 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014556 mRNA upstream 36133 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014557 mRNA upstream 106950 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014558 mRNA upstream 124186 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014559 mRNA upstream 140550 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014561 mRNA upstream 306247 17754964 ~ 17808430 (-) True AMCG00014561
TU87063 other downstream 5784375 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6648721 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8129701 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9062644 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9288278 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10881022 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11940573 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14814450 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15148745 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15148745 32597462 ~ 32619149 (-) False G73127

Expression Profile