RNA id: AMCG00014557


Basic Information

Item Value
RNA id AMCG00014557
length 1020
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00014557
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17555667 ~ 17566646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGATTTTACAGATGAAGACCTGGACAACTTTCTGCAAAATGAGGTGGACCTCAGACACCGACAGGTTTACAAGACAGTAGAGCAGGTACAACATATAATGAGGAATCTGACCACAGAGGTGAGCAACAAGGATGGAAGATTTCAGTCGATCTCTAACGCCGGTATCCACAGTGATAACTTAAAGGTCCTCACACCTACCCTCTTCTTGATCTCTGTGCCAATCAGGGGTCTGTGTGGGTATAAAGAGCGCAAGGCCAGGCAGTGGCGTTATTACACCCTGAGCGGATCAAAACTGTTGTCCCCAGTGCGGGAACCGGAGAAGCTACACCAATGGCTGGAGCTTGAGAATTTCAGCAACCCATCCCAGGAGTGGCATGATGCTCGAGTGGCCATCGAGGGGGACATTGTGCCAGCCAAGGTGGTGAATGTCTTCAAAGAGCTGCTGGAAGCTGCCATCCAAAGCTGTAACCTCACAGAGGTGGAACTTTTTCCAACTGTGGAGCTCATAAACTGCTGGCCGAAAAAGGCTCGCTGGCCTAGATTCCTCAAACGATGGCCCTCAAAGGAGAAAGCAAGATGCATCAAGtcttttggATTTAATCTGATGGCCTCTTCGAATTACCACTGGCTGCTGTCCTTCTCGAGAGCGGAGCAGGTCTTGATGAGCAGTATTGATGAGGACGGTGGCTGCAGAAGGAAGTGCTATCGGATCATGAGGCAACTGAAAGAGGACATTTGGTGCACTGGAAGTAAACCTGTAATCACTGCCTACCATCTGCAGACCCTGTTATTTTGGTCCTGCGAGAAATATCCTTCCACCAAAGACTGGTGGAACTTTAAACAGAGTTTCCTTCGACTTGTGAAGAAGCTTCATAAATGTGTGAGTCAGAGGTACCTGAGACATTATTTTGTAAGGGGCTACAATCTGCTTAAATACGCCAACACAAACGAGCTGGATATGATGGGCAAAAAGATATTGGATTTCCTTGAGAATCCTGGACTCTACATCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88625 lncRNA downstream 106950 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 204695 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 271091 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 832117 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 1086439 16465779 ~ 16469228 (-) True G70731
TU88648 lncRNA upstream 33815 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 437164 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 448180 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 762551 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 1097618 18664264 ~ 18664631 (-) True G71133
AMCG00014556 mRNA downstream 54711 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014555 mRNA downstream 93377 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014554 mRNA downstream 123481 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014551 mRNA downstream 232046 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014549 mRNA downstream 276220 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014558 mRNA upstream 6257 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014559 mRNA upstream 22621 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014561 mRNA upstream 188318 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014562 mRNA upstream 368520 17935166 ~ 17935714 (-) True AMCG00014562
AMCG00014567 mRNA upstream 424005 17990651 ~ 18022085 (-) False AMCG00014567
TU87063 other downstream 5893174 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6757520 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8238500 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9171443 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9397077 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10763093 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11822644 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14696521 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15030816 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15030816 32597462 ~ 32619149 (-) False G73127

Expression Profile