RNA id: AMCG00014563


Basic Information

Item Value
RNA id AMCG00014563
length 3216
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00014563
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18070534 ~ 18080340 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGAGCGCGGCGCTTCGAGGCAGGAGGGCGTGTGAAGACAGAGCTCGCCACCATACCTGCGCTCAAGAGAAATAACCCTTCACTCGTAACTCGGACTTACACTGCGGGTTTTGACCCCCTTTTTAGTTGTCGCCGATGGCCACCACCACTCTGCTGCCGATGAACGCGGGGCTGGGTCCGGGGCAGGAGGAGCTCTTCTACACGCTGCTCAGACCGGCGGCGCACGGCGACGGCAGCCCGCACAGAGAGCCCGCCGGGGAGCTGAGGAGCGCCGCCTCGGCCAGGGCTTTGGGCGGCGATTTCGCACAGACGAGATCAGAGATGGATAAGTACCTGACGCCCCAGCCGCCGCCACCCCTGATCGTTCCAGATGCGAAGAAATTCCGCCGTGACAGTGCTTCTGTGGTGGACCAGTTCTTCGACGAGGATGAGGGGTCACCTTACAGTATCAACATGAATGTCTTCCTCCCTGACTTCACATACCTCCGGACCGGCCTGTGCAGACCGCAGAAGTCGCCCATGCCTCAGATCAAGACTGAACCCATGCCCTGTTATGTGCCTCAGAATGGCCCCAGTACTAGTGCAGCACAGGCCCTTCCCGATTTCACCAGCGTCTTCAGctcctcagtggggacggacaTGAACAGCATCTTCATCAAACAAGAGATGCCTTCTCTTGATATCCCCCATGATGGGCCCTTGTTTCAGCTCCTGAATTCTCCAGATCTGGAAGGACCCCTGACTGGAAACCAGACCAGTGCGGACTCTCACGGCAGCGTTCAAATGACGGCCACGATGCCCGCTCTTAATGACCTGCACTTAGCCACCCAACAGACTTCAGTCAAATCATTTTGTCATATGCACAGTGGGGCATATTCCCTGCCCCCCCATTTtgttcataatcatcatcatcatcatcatcatcagcaaccgcagcagcagcaacaacaacaacaacaacaacaacaacaacaacatccaaAACCCACCTATCTCCCACCCTCTCCTCCCAATTCCGAGCCTGGCAGcccagacagacaaacagaactCTTGCAGAATTTGTCGCCCCCTCCCTCTTATGCGGCCAGCATTGCCTCCAAATTGGGAGTCCACAATCCAAACCTCACCCCGGCCTTGCAGGTAGCCCAGCAGTCTATGCCAGTTAGGTATAATCGCAGGACTAACCCCGACTTGGAGAAAAGAAGAATACACCACTGTGACTTTCCAGGGTGCAAGAAAGTCTACACCAAATCTTCTCACCTGAAAGCCCACTTAAGGACTCATACTGGTGAGAAACCCTACAAATGCACCTGGGAGGGATGTGACTGGCGGTTTGCCCGGTCAGATGAGCTGACACGTCACTTCAGGAAGCACACGGGAGCAAAACCCTTCCAGTGTGCCGTATGCAGCCGCAGCTTCTCGCGCTCAGACCACCTGGCTCTGCACATGAAGCGCCACCAGAATTAGCCTGCCACCGACAGCAGCACGAAACCTTGGAGGTTGCTGCCTGAACTATTTTCACAGTAAactttggggggtggggggggacaggAACTTTTTACTTGTATAGATTTAATGCAACATGGCTGAAGAGGAAGTCGGAAGAAtttgtttatcattattattatgattgttacttttctttttaagcttGGATCCATGCATTATTTTTCgaaaaccaaaaatataatgtttcttctcaaataaattaaagagacCTTTATCATTCACATTATGACAAGAAACCAAAGTTTCTACATTTctatcttttagttttttgaccAAAGCATGTTTCAATGAAGAGAAGCTGATGCAGAGATCCGAGACAAAATAatcttttaaatgaagaaaaccaaaaaacacacaaacaaacaaaaaaaaaccttcaggccttatatgaaaatgaatttcaaACCAAAGAACAAAACTTGGAATCTACTTGAAATTTTATGgaatattttactttgaattagacatttttattatgacaaatatttacataatataatattatgtgATAGCACACATATTGTACAGCATATATTTGTAAAGGGCTTgaactacatttatttgtttaccacAACTAGTGTTAGAAGCTTTAAAATCACTGTTAATTCCTGCCTACAAGAGATAAACACCATACTACTGCCGATGTCAGAATCGCCAAAAGGCCTGCTGTGATTTTATggtataacacacacacacacacacacacaggataaTGCAAAACCATTGAAActggtgaaataaaaatgtggcCTTTATTAACAATGGGTATAAATGCCGGATTGATCTCATAAAAAAGACTAATAAGGTTTACAATCCATTGGACACTATTTTTCAGTAACCATACTGGAGAAAATATCAGAGACTTTTTGATATTTAGTTTCAATCGCACTGGAAGAAAAATGTAGGActggagttttattttattacttctaAATTAAAACTTGCATTTCAAACTGGATTTCAGTTTGAGTTTTATCGCCTTAAcaaaaattgaatgtattactactgattttgtttttaaacataaggGAGTGATTAATTAactactaattaattaattttatatagcGTAAAAAAGGGATTACCCAACATGGGATCAAACTGGTTCAAATAGAGGTACCATTTGTACAAGCATTTAGTTGTTTCTACTGATGtgcatgtttcattttcttatttctaaTCTTGTTTGAAGCCAAATGAATGtataaaaccacacaaacaatTGTCTATAAGAAGCTCTAAAAATGAAATTCAGTCAAATGCCTTTCAAGGccctttcagaaaacaaaaaatgtgtttctggtTAAATTAATGATCTTTTAGGCACTTGTGAAAAAGATTGCTTGGTTCATCGGTACATAagttccttttttcatttttatttatttatatagcctggTATACATTGGAAGCAAATAATTTATCATTTGTATGTGAGATGCCTTAATGTAAATACTTGGCATGTGctgtacatattgtttttttgtaacatttgtcaGTTGTTTTTGGAAACAAAGGGGCAGAGGCACTACCCTCCTGCGTCCGCACCGCGTGTTGGTTTCATGTTGTTGTGAGTGttccacttctgtttttatattgttttaaattgatgtgtaaaatgtatgatgAAGTTCTCAAAGCAGTCGcgtgtttattgttttggaaCCGAACAAAAAGCCTAATAAAATGTAGCTGTTGCTTTCCA

Function

GO: NA

KEGG:

id description
K09206 KLF5; krueppel-like factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88649 lncRNA upstream 419532 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 579927 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 583484 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 617167 17403511 ~ 17453367 (+) True AMCG00014553
TU88591 lncRNA upstream 719582 17349436 ~ 17350952 (+) True G70897
TU88777 lncRNA downstream 384879 18465219 ~ 18468335 (+) True G71036
TU88779 lncRNA downstream 396703 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 608208 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 820885 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 967618 19047958 ~ 19048172 (+) True G71237
AMCG00014564 mRNA upstream 3352 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014565 mRNA upstream 40638 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014560 mRNA upstream 290453 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014553 mRNA upstream 639303 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014552 mRNA upstream 737719 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014569 mRNA downstream 243930 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014574 mRNA downstream 294304 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014573 mRNA downstream 390211 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014575 mRNA downstream 398069 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014583 mRNA downstream 506094 18586434 ~ 18609444 (+) True AMCG00014583
TU88601 other upstream 622081 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 1601421 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1937732 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 2390746 15675631 ~ 15679788 (+) True AMCG00014490
TU88725 other downstream 191514 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 4775002 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9755163 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9788363 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 10222033 28302373 ~ 28304073 (+) True G72175

Expression Profile