RNA id: AMCG00014564


Basic Information

Item Value
RNA id AMCG00014564
length 2614
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00014564
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18038108 ~ 18067182 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGCACGGTTGGTGCCGCCCGTGTTTGCGACGTCCGTTTCCAAGATCCCAACTGTGTTGTTATTATCCGGCGGTTTCTAAGGGGGCCGGCGCGGGACATTTCAATTTTGAAGTTAACTATCTTTAAAAATAGGGTTCGTGGCAATAATAACATAACAAGCAGCCTGTAGCTTGAGACCTACACGTTGGTGATACTTTACAGCACCTGACAATGCCCCCTAAAAGGCATAAGGATCCCAAGGTCAATATTTCCAGCTCCTTGGAGTCGGAAGACCTGAGCTTGGAAACCACAGTTCCCACTGAGGACATCTCCTCGTCCTCGGACAGAGAGGGCACCACAAAAGTCACCAGGCAGCTGATTGAGAGGAAGGAGCTGCTGCACAGTCTTCAGCTGCTCAAGATTGAGCTGTCACAGAAAACGCTCATCATTGACAACCTGAAGGCTGAGTATCTTACCAAGAtcgaggagctggaggagaagcTGAATGATGCTCTTCACCAGAAGCAGCTGCTGGCGTTACGGCTGGACAGCCAACTCAAACTGCAGCAGGAGGAAACCAGGAAGCAACAAGCTTTCCGGAAACAGGAAATGGACACTATTCTGTTGCGGCAGAAGCAGCTGGAGGAGACCAACCTGCAGCTCCGTGAAAAGGCGGGGGATATACGACGCAGTCTGCGGGACTTGGAGCTCACTGAGGAAAGATACTCTGAGCTGAAAGAGCTCCCGGAGGACCAGCTCTCAATCCCAGAATACGTTTCTGTGCGATTCTATGAAATGGTTAATCCATGGATAACAGAGGTGAAGGAACTGCGGGTAAAGAAGCGCAGCCTGTCTGAGGACTTGGAGAATCAAAGACGTCAGCTAAAATCAATAATGGAAGGTTATGAAGAAGAAAGACGAATGCGTTCAGAATTAGAAATCAGGAGTCAGCGACTAACTCTGGAGTTAGCAGACACAAAACAGCTCATACAGGAAGGGGATTACAAACGAGAAAATTATGACAAAGTGAAACGAGAAAGAGACAACCTTGAACATGAGATCTCTGACTTAAGAAAACGCTTTGAAATACTTGATGttgcacacaaagcacaaacaaaagagaGGAATGATCTGGGCAAAGAGGTGGCAGCGCTGCAACAGTCCTCCACGTTACTTCAGAAGGATAAAGAGTATTTAAATCGGCAGAACCTTGAGCTCAGTGTCCGCTGTGCCCACGAAGAAGATCGTATGGAGAGACTTCAAATTCAGCttgaagaaacaaagaaagccCGTGAAGaagcatatgaaaaatatgttgCTTCAAGaGATCATTACAAGACAGAATATGAAAACAAGCTACGTGATGAGATAGAACAAATCAGAATGAAAACTAATCAAGAAATTGAGAGTCTTCGCAGAACTTCTAAGGAGATGTATGAACGGGAAAACAGAAACCTTCGTGAAACAAGAGAGAATTCCATTGCCGAGAAAGAAAGAGCTGTTCAAGCAGAGAAGGATGCACTATCAAAATACGACCAGCTTTTGGAACAGTTCAGGCAGCTCCAGCTTGGGATGGACAGCCGAGTGGCTGAGTTGCTAAATCAAGTGAAACTGAAATCCTTTGAAGTGGAGCGTGCTCAGATGATTCAGGAGGAAACTGCCAGGAATCTCAGCCAGTGCCAGATAGAATGTGAGAAGCATCAAAAAAAGCTAGAGGCAAGTCACCCATTTATAGTCTTGACAAAGGAGTTTTATGGCCTTCAAACATCATCAGAGAAACGTATTACTGAGCTGCAAGCACAGAATTCAGAGTACCAAGCCCGCCTGGAAACCTATGAAAGATTAGAACAAGAGCTTGATGATGTCACCATGCAAGCTGCAGAAATGGAAAATGAAGATGAGGCAGAGAGAGTTCTTTTTTCATATGGCTATGGAGCAAATGTTCCTACAACAGCTAAACGACGCCTAAAAcaaagTGTTCACCTGGCCAGGAGATTACTACAACTTGAGAAACAGAACACCTTACTGAGAAGAGACCTGGAACGAAAGTCGACTCACGTTGAACAGGTCTCCAAAGAGCTGGACAGAGCCAATTACCTCATTAACCAGGCACAGCAGCCATATAGCTACCTGATAGAGACAGTTCGCCAGAGGGACACACAAATCCTCTCGCTGAAAGAATGCGTCTCACAGCTGGAGGAGGATGTTCGAACactaaagaaagagaaaacggCTCTACAGCATGTCAAGAATAACATGGCGGCAGATTTAGAAAGACTTCTAAATCATCGTGAGGAGTTATCTGTAATGAAGCAAGTTCTGATTAATATGCACACAAGGCACTATGGTGATGGGTTACCTCACCCTCGAAATGAAGCACCGAGTGGAACAGCAGTGTACGGGCCGAGAGGCTCGACTAACACAGAGGAGGAGAATAATCCCAAACCCAAACCAACACTGTTTACAAAAAAAGAGGCTCCTGAATGGTATAAGAAACTGAAGCATAAAAAATAAGTGacaagtaaaaatgtatttactaatcatatagactttttttttgtaagataaTGGTCTGAATTAATGTGCATAAATGTTtgtcaaactttttattttgtgctaaatatttgtgaaaat

Function

GO: NA

KEGG:

id description
K16538 PIBF1, CEP90; progesterone-induced-blocking factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88649 lncRNA upstream 387106 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 547501 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 551058 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 584741 17403511 ~ 17453367 (+) True AMCG00014553
TU88591 lncRNA upstream 687156 17349436 ~ 17350952 (+) True G70897
TU88777 lncRNA downstream 398037 18465219 ~ 18468335 (+) True G71036
TU88779 lncRNA downstream 409861 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 621366 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 834043 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 980776 19047958 ~ 19048172 (+) True G71237
AMCG00014565 mRNA upstream 8212 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014560 mRNA upstream 258027 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014553 mRNA upstream 606877 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014552 mRNA upstream 705293 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014536 mRNA upstream 1272556 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014563 mRNA downstream 3352 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014569 mRNA downstream 257088 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014574 mRNA downstream 307462 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014573 mRNA downstream 403369 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014575 mRNA downstream 411227 18478409 ~ 18480032 (+) True AMCG00014575
TU88601 other upstream 589655 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 1568995 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1905306 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 2358320 15675631 ~ 15679788 (+) True AMCG00014490
TU88725 other downstream 204672 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 4788160 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9768321 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9801521 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 10235191 28302373 ~ 28304073 (+) True G72175

Expression Profile