RNA id: AMCG00014565


Basic Information

Item Value
RNA id AMCG00014565
length 1518
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00014565
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17949560 ~ 18029896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTAACCTCCCAGTCTGATCAATGGGAGAGGAGTCAGGTGTGTGAGGTGCTAAGGAAGCTGTTACCAGGCAACCGCTCGTCCAGCTACAGGTTGTTTGTTCCTGTGGTTGACATGGAAGATGTGTATGAAATGGGTGTTCAAATCACCCCTGAAACCCCCGGACGCCCAGCAGTCCTCAACCCTTTTGAGAGCCCGAACGACTATCACAGCCTGCACGAATCGGTTGTAGCAAGTCCGTCACTCTTCAAGTGTTCAAGAGCTACATCAGCAACACCAGCAAAATTCAAGTGGTCCATAGATGAAATCGCTAGCTTGCATCCAGTTGACATTGACCCAGAAGACATTCATCGTCAGTCGTTATATTTGAGCCAAACCAGGACAGATAAAGATATTGAGGAAAGAAGACAGAATGCTATTGAACAGTTCTTCACAAAGAATACAATAGTTCCCTCGCCATGGGCTGAGCCAGAAAGCAGACATGCAACACGAAcgcatactttaaaatGTTCTGTTTCTCCTGTGATTCCAGAGGAAAGGGATTATGTGAAGCCAGATGATGCAGTTGATCAGATGCACGAGAGTCTGAGCTCCTCGTCTTTGCGACGCAAGCTCTTCCTGGATGGGAATGGCAGTGGATCCGACTCGTCCTCCCCAGCCAGCCCGGACCGCGGCCCCATTGACATAGCCGTGGAACCAGCAGAGGGGCTGTTCTCTGTGGATTTATCGCCTTTGCAAAATAGAATTGCGGTTGCAACGCCAAACTCCGGGCAGTTTTCCTCTAGTCCCATTCAAGGCAGTACCAGGGCATGCAGTTTGGGAAGTTTGCCGAGTCCTATGTTCCCTGACAGGTCTTCTCCAAGTTTGAAGTCTCCCACTTTATCTCCCATTATTCCCCAGGCTGGAAAGACACCAGGCTCAGCGGAAAGGAGGAGGCTCAACTTCCGAACACCTGATGGAGCAGGACTCTGCAGTTCAAACACTAAAGCTAACCACTGCACTGAAAGTCCGTATGTTGAGGGATGCTCTCCCATACAAATCTGTTCCCCGGCGAGGTCCAGTACCAGTGTCCGGACACGTCGCTACAGGGGTTCTCCCTTCCAGCTCCCCTTTGCACATGAACTGAGTTATGAGGAAAAAGAGAATTTTCCACCAACTGACCCCTTGCCCCCCATGGACACGGACGCATGCTGCCTGCATTCTGACCTCATGGCGGGGAAGACCGAGTCGTGCAGCGGGAGACAGGAGCCCGTCTTGCTGCCCGCTGAGCCGGTACAGGTGGAGGAAGCCAAGGAAAATAACACTGTGAATATGGGAGATCCAGTGGAAAGCGCAGAAGATGAAAGCACCTGGGCGAAGGACGGGCCGGACAATACTCATATCCAGCTGACGAGTTCCAGAACGGGAAGCATCTCCAATGTAGAAAACTCCCACATGTTTATATCCCTGCTGGCGGAGAGCAGTGCCATCCCTTGTGATGGCAACAGCATGCAGGTTCACTGGATGGAGATACACTAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051301 cell division biological_process
GO:0050789 regulation of biological process biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
K16831 BORA; protein aurora borealis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88649 lncRNA upstream 298558 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 458953 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 462510 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 496193 17403511 ~ 17453367 (+) True AMCG00014553
TU88591 lncRNA upstream 598608 17349436 ~ 17350952 (+) True G70897
TU88777 lncRNA downstream 435323 18465219 ~ 18468335 (+) True G71036
TU88779 lncRNA downstream 447147 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 658652 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 871329 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 1018062 19047958 ~ 19048172 (+) True G71237
AMCG00014560 mRNA upstream 169479 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014553 mRNA upstream 518329 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014552 mRNA upstream 616745 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014536 mRNA upstream 1184008 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 1217691 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014564 mRNA downstream 8212 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014563 mRNA downstream 40638 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014569 mRNA downstream 294374 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014574 mRNA downstream 344748 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014573 mRNA downstream 440655 18470551 ~ 18475184 (+) True AMCG00014573
TU88601 other upstream 501107 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 1480447 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1816758 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 2269772 15675631 ~ 15679788 (+) True AMCG00014490
TU88725 other downstream 241958 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 4825446 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9805607 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9838807 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 10272477 28302373 ~ 28304073 (+) True G72175

Expression Profile