RNA id: AMCG00014573


Basic Information

Item Value
RNA id AMCG00014573
length 3226
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00014573
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18470551 ~ 18475184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaacagtcttagagaagttacacactacaggcacttttatgcagaccagacaggagagaaagataactgGCCcgcatgtctgtcccgtgatgagtgcaagttcggtttctgcctgacaactgctcagcaAGACCCATATATAGTTAAACCGGGGGAAATGTATGGCatatgaaatgtttaatataaggggggatTATTGAATATATCAAGCACACTgtctggtgaaaactggttcttatcagactctgttcctctgggtatcagggttacactatggcacagtactgtagcacagtgggacagtgaccttgtttacacagacacacagggaaagaaatgcagttcttcagtaACCCTTTTGTATAATATACAAATGCAGTTGCTGGTGTCTAAAAGCAGTAAACACATACAACAGTATGTTTGAGCTCTCTCTTCATCAGTCAGTTCATCTTAGTTTGTATAGCGACAGAGCGCTTTACAAACGCATtaattaaaccacaaacaatGAATAactaaaaccaaataaaccattaggcaccaATTAACCATCTTGTTAGCAATGTGTGTAGGCTACAGTCTGTCTTTCAAAACATGCAACTTCTGAAACCCCAGGGTATTACTTAAGTGCAGTGATTTGGACATTCCAGTTTGCAGCGGTTTCATTTCCATTATTCAAGAATAAGTCAGACTGAAAGTTTTAACATTGCAATATTTTTCCCGCAAGATTCAACCAGACGGAGCCATAATGGTGGAGTGGTCAGTTTCTGTATTCAACAAGAAATTCAAGCACACTGCAAATTAAAGTACAGTAATCTGTCCATCtctggtgtttgttttatggTCGAGGTCAAAACCAGTTAAAAGTGTATATGTGTGAagcattaaaagacaaaacctCTATAAGTCaaagaaatcaaatacatttgttgatgACAAAAATAAGGGTTTAGCATGGGTTAACATATTTTATAACTGAAAGCATCTCCCTAACAAACTGAcctatattgaaaatgtatgcgTTGCTTTAGTTTGTTTCCTTGAAATACTGATCCAGTCAAATGTACATCATTAGATTATTGGTATACTTGGCATTGTATCAGTGGCTGTAGCACAgacaaacattaataaaatcttCAATTCCTTAAAGCACTACTATCGTGTGGGCAGATTTCTGCGTGTTAAGCATGTAAAGGTATTTCGAAAACCCAGTGATGACATGAGGCATTTTGGTAGCTATAAATAAGGAAGTTTGTGGCAGTACCCTACAGTGGTAAGCCGGAGAAGACATAATGCTTCGAAAGGGTGTTACTGATAGCTTCGGAAGTGCGATCCACAGTCTGAAAGCTGCTCACCTGACTGACACTGTGATTCAGAGAAGTAAGAGGATGATTCTGGATACGCTGGGAGTGGGGCTGCTGGGCTCTACCACCGCAGTCTTCAACAAGGTCCTCCAGTACAGTAAAATGTACAGAGCAACCAAGACCAGCACAGTGTGGGGAAGATCAGACCTCACCCTGCCTCCTCCGTACGCCGCCTTCGTCAATGGAGTCGCGGTCCACTCAATGGACTTTGATGACACCTGGCACCCTGCCACTCACCCCTCTGGCGCCGTCCTCCCTGCGTTGCTGGCTTTAGCAGAGACCCTGAACACAAGGACATCTGGTCTGGAGCTGCTCCTAGCTTTCAATGTGGGTGTTGAAGTTCAAGGAAGGTTAATGCGGTTCTCCAAGGAAGCACACAACATTCCCAAAAGATTCCACCCCCCCGCAGTGGTTGGGATCATGGGCAGTGCAGCTGCATCAGCTAAACTTCTCGGCCTGGAAGTTCCTCAGTGTCGAGAGGCACTTGCTATAGCTGCCTCGTACGCCGGGGCTCCTATGGCCAATGCGGCCACACAGACCAAACCCCTGCACATTGGGAACGCCACACGAAGGGGCTTGGAGGCAGCCTATTTGTCCCTTTTGGGGCTTGAAGGCAACAGGCAGATTCTTGACATGGACTCTGGTTTTGGCGCTTTCTACACAGACTACACTCCAGACAGGCTGCCGAATGTCAGCTCCTACAGGTGGATTCTGGAGGACCAGGATGTGGCTTTCAAGCGATTCCCGGCTCACTTGGGGATGCACTGGGTGGCAGACGCGGCTGCAGCATTGAGGGCCAGATTACTAGCAACCAACCCAAATATGGACTTCAAGCAGATCAAACACATAGTGCTGAGAGTGCCGAACTCCCGGTACATAAACTGCCCTTTCCCTGCCTCGGAGCACGAAGCCAGGCACTCCTTTCAGTTCAACGCTTGCACCGCAATGCTGGATGGAAAGGTGTCGGTCGAATCTTTCAGCAGCTGCGAAATGGACAGAATGGAATTAAAAGAGCTGCTGGCGAAGGCGAAAGTGGAAAACCCACAGGACAACCTGTCCAACTTTGACACAATGTACTGTGAGGTCCAAGTTGAACTGAACAATGGGGAGGCGTTTACAGAGCGCTGCAATACGTTTTACGGCCACTGGAGGAAGCCTCTGAGCCAGGCAGATCTCTGTCAGAAGTTTAGAGACAACGCGTCCCTCGTGCTGCCACTGGACGCAGTGGAGGGTGTTATCAATCTTGTAGATAACTTGGAGCAGCTCACAGATGTTTCTGTGCTGAGCTCATGCCTGCAAATGAATATGCAAACTCAGCTCTGTCAGAAAATGCCTCATTGAGTCACTCTCGGTCAATAACTCATTTGTATTTCCTGCTACATCAACCACAGGGTAAAACAAACGaaagtcaaacaaaacaaaaacactcaagtTCATTTTGTACCCATCTTGTAAACTTGTTTGGATTGTATTCGGTACTATTAAAAATACTAATCAGAATGATTGTCCTGACGTAACAGAATACTTACAATGGCAGTTACTGAACCACACTGGGGTAAAACAAAGGATTTGCTCTGTGCTAATTTTAAATTTGCTTTGGTatcagtgacattttaaatcactataGACCCATTCCTTATTTACATGTAgcttttttccattcatttaagACAAGGAGCACTAAAGAGAAGATATTATTAGATAACTATAGTGTTCTTCACTCTTTCCCATGACTCATGTCTGCTCTAAACAAGACAATGTTATTGATGGTATAAACAAACTCTGTAAAGGGGCGAGGCTTTAGACAATTCAGATTATGATGAATGCAGgtctgtgtaaaataaactaCTACCTCCCGTCCACA

Function

GO: NA

KEGG:

id description
K17724 IRG1; aconitate decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88777 lncRNA upstream 2216 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 819549 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 979944 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 983501 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 1017184 17403511 ~ 17453367 (+) True AMCG00014553
TU88779 lncRNA downstream 1859 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 213364 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 426041 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 572774 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 743133 19218317 ~ 19222919 (+) True G71283
AMCG00014574 mRNA upstream 74951 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014569 mRNA upstream 138137 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014563 mRNA upstream 390211 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014564 mRNA upstream 403369 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014565 mRNA upstream 440655 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014575 mRNA downstream 3225 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014583 mRNA downstream 111250 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014580 mRNA downstream 135376 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014582 mRNA downstream 151375 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014586 mRNA downstream 161522 18636706 ~ 18638604 (+) True AMCG00014586
TU88725 other upstream 196191 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1022098 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2001438 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2337749 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2790763 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4380158 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9360319 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9393519 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9827189 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11376266 29851450 ~ 29851821 (+) True G72605

Expression Profile