RNA id: AMCG00014581


Basic Information

Item Value
RNA id AMCG00014581
length 2571
RNA type mRNA
GC content 0.45
exon number 20
gene id AMCG00014581
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18645860 ~ 18659061 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGCTGTCCCCTTGCCACCCAAAGAGAGTAACCTCTTTAAGAGGATCCTGAAATGTTACGAACAAAAGCAGTACAAAAATGGACTGAAGTTTTGCAAGATGATTCTTGTCAATCCAAAATTTGCTGAGCATGGAGagacTCTGGCAATGAAGGGGCTCACTCTCAATTGCTTAGGAAAGAAAGATGAGGCGTATGAGTTTGTCAGGAGAGGACTACGCTGGCATGTCTATGGACTCCTGCAAAGATCTGACAAGAAGTACGATGAGGCCATTAAGTGCTATCGCAACGCACTCAAGCTGGATAAAGACAACCTGCAGATCCTCAGAGACCTGTCCCTGCTGCAGATACAGATGCGAGACCTGGAAGGGTACAGGGAAACCAGGTACCAGCTGCTGCAGTTAAGACCAACACAGCGGGCTTCGTGGATTGGCTATGCCATCGCTTACCATTTACTTAAGGACTATGACACGGCCTTAAGATTGCTGGAAGAATTCAGAAAAACTCAGCAGGTTCCTCCCAATAAAATTGATTATGAGTACAGTGAGTTGCTACTCTTCCAGAATGACGTCATGAGAGAGGGCAATTTGTTCCAGGAGTCTTTAGAACACATAGAAGCATATGAGAAGCAAATATGCGATCAACTTAAGGTAGAAGAAATAAAAGGTGAAATGCTGTTAAAACTGGGAAGGCTAGAGGAGGCTGCTAGTGTATACCGGGTTCTCATCGATCGTAATGCAGAAAACTGGTCTTACTATGAAGGCCTGGAAAAAGCTCTCCAGCCAAGCACTGTGGAGAAGAGGCTGCAGATTTATGTAGAAGTAGGAAACATAAATCCCAGAGCTGTCTCTCCAAAGAGGCTGCCACTGAACTTTCTTTCAGGACAAAAATTCAGAGAAAAAATTGGCAAATTTTTAAGAGTAAATTTCAGCAAAGGCTGTCCTCCCTTGTTCACAACATTGAAATCATTATACAGCAACCAGGAAAAGGTGGCTGTAATACAAGAACTAGTTACTGGGTATGAATCTTCTCTGAAGACATGTGATTTGTTCAGTCCTAATGaaaGTGGTGAAAAGGAGCCTCCAACAACACTGCTTTGGGTTCGATATTTCCTGGCACAGCATTTTGACAAACTGGGCAAGAGGGCTTTGGCTCTGGAATACATCAATGCTGCAATCGAAAGCACCCCCACTCTTATAGAACTGTTCTATGTAAAGGCAAAAATCTATAAGCATGCAGGCAACCTAAAGGAAGCCGCAAAGTGGATGGATGAAGCGCAGTCCCTTGATACAGCTGACCGTTTCATCAATTCAAAGTGTGCAAAATACATGCTGAGAGCTGGCATGATTAAGGAGGCCGAGGAGATGTGCTCTAAGTTCACCAGGgAAGGCACATCGTCCATGGACAACCTCAATGAAATGCAGTGTATGTGGTTCCAGACAGAATGTGCCACTTCTTACCAGAGTCTTGGAAAATATGGCGATGCTCTGAAGAAATGTCATGAAATAGAACGGCATTTTTTTGAGATCACAGATGACCAGTTTGATTTCCATACCTACTGCATGAGGAAGATGACTCTGCGTGCCTATGTGGACCTGCTCAAACTGGAGGATGTCCTCAGAAGACACTCCTTTTACTTCAAAGCAGCACGGTGTGCCATCGAAATCTACTTGAAGCTCCACGATAATCCTCTAACAAATGAAAGCCAGGAACAGGAAGTCAACTCGGAGAACCTGTCTGCCAAGGAGCTGAAGAAGATGCTGAGCAAGCAGCGGCGAGCACAGAAGAAAGCTaagctggaggaggagaggcGGCATGCAGAGCGAGAGAGGCAGCAGAAGAACCAGAAGAAGAGGAgggatgaggaagaggaggagaccAGTGGCCCAAAAGAGGAACTTGTACCAGAGAAACTTGAACGGATTGAAAACCCATTAGAAGAGGCTGTCAAGTTCCTGACTCCCCTCAAAAACCTTGTGGCAGACTGTATAGATACGCACCTTCTAGCATTTGAAATCTATTTTAGAAAAGGAAAGTTCCTCTTAATGCTCCAGTCCGTTAAACGAGCCCATGCCATTGATGCTGACAACCCATGGCTGCATGAATGTTTGATTAGATTCTCTAAAGCTGtaTCAGATCATAGTAACCTTcatgaaaccattaacaaaGTCTTGACTCAAGAGATGAAGAAAATCTTTGCTAAGAAGAATTATGAGAGCTTCAATGAAGAATTTCTCAAGAAGAAGTCCAACTCTGTTGAGCACCTTCTGTCAGGTGCCAAAATGATGTATTTCCTGGATAACTCAAGGCAAGAGAAAGCCATCTCCATAGCCACACAACTGGATGAAACCATGTCCGACAGAAATGTAAAGACGTGCACCAAGGTCTTGGAAGCCCTATTAGATGGGAGTTTTGGGAGTTTACAGTTGCAGGCAGAGGACTATCGTACAGCGTGCCACAAGCTCTTCCCACTGGCCACCGCCTTCATGCCGATGGCTAATGAGGATGACAAGAGCCCCGCCATGAACAATGCTACTATTAATCACGACGTGCTGTCCAATGAAATCTGA

Function

GO: NA

KEGG:

id description
K20792 NAA15_16; N-alpha-acetyltransferase 15/16, NatA auxiliary subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 167832 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 177525 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 994858 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1155253 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1158810 17418439 ~ 17487050 (+) False AMCG00014553
TU88954 lncRNA downstream 29487 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 242164 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 388897 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 559256 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 559256 19218317 ~ 19222919 (+) False G71283
AMCG00014586 mRNA upstream 7256 18636706 ~ 18638604 (+) True AMCG00014586
AMCG00014582 mRNA upstream 13170 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014580 mRNA upstream 21271 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014583 mRNA upstream 36416 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014575 mRNA upstream 165828 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014584 mRNA downstream 3147 18662208 ~ 18667126 (+) True AMCG00014584
AMCG00014587 mRNA downstream 9745 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014592 mRNA downstream 122996 18782057 ~ 18786527 (+) True AMCG00014592
AMCG00014591 mRNA downstream 144345 18803406 ~ 18845971 (+) True AMCG00014591
AMCG00014596 mRNA downstream 194247 18853308 ~ 18878273 (+) True AMCG00014596
TU88725 other upstream 371500 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1197407 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2176747 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2513058 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2966072 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4196281 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9176442 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9209642 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9643312 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11192389 29851450 ~ 29851821 (+) True G72605

Expression Profile