RNA id: AMCG00014582


Basic Information

Item Value
RNA id AMCG00014582
length 2924
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00014582
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18626559 ~ 18632690 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGTACGTGGGACCTCAGTGCTACACAAAACATGGAGGACTGTGGTTGAGTTGTATAGTGAAACTTAAGTTCCTTTTCGAGTACATGTATATcactgaaaaatacatgtaattagcAATATCTATCGGAAATGGCAGATTACTGGAAGTCACAGCCCAAGAAGTTCTGCCAGTACTGCAAGTGCTGGATAGCAGACAACAAACCTAGTGTTGAATTCCATGAGAGGGGAAAGAACCACAAAGAAAATGTTGCTGCCAAAATTAATGAGATTAAGAAGAAGAGTGTTGACAAAGCGAAGCAGGAGGAACGCATGTCAAAGGAGTTTGAAGCTATGGAGGAAGCAGCTTTAAAAGCGTATCAGGAAGATCTAAAACGACTAGGAGTTGACTCAGAACCACCAAAGGCTGCAGAACCCCAGAGTAAAAAGCCAGTAAAGCGGACTTCAGCTCCAAAACGTGGAGGAGGACGGGACTGGGTGGAAGGAAAATCTTCTGGTTGCCCATGGATTGAAGCTGTTAGCCCAGAGGGCTTTACCTACTACTATAACACAATAACAGGAGaGTCCAGATGGGAGAAGCCCGACGAATTCACACCCGATGCGTCCGGAAGCAGTGAGCCCACAGTGGGCCTGGAGGAGTCTCCCTCCTCTGAATCTCGATCCTCGTCTGTGGCGGACGACCTTCCTGAAAGGGAGGAGGGGACCACACAACCAGAGGCTCCAAAAGAACCACAGAAAGTCAAGATCAGTTTCAGAAGAAAGAGTCCAGCAGAAGAGAAGAGCAAAGTCTTAGAAGAGTGCTATGATGCAGAGGAAGAAGAGATAGAAACTCagaaagaagaggaggaggagaagggggtagagaaagaggaggaggaggaggaggaggaggaggagaaggagaagaattCTTCCCCAGAAATTGAAGAGAGCCAAGTCAGAAAATCCAACAAGCCAACTCCATATGGAGTCTGGGAGAGGATACAACAGGAGGAAGACCCATATGAGCAGGTGGACTTGCAACTTCCCCAAGTGGAAGGTCAGAACACAGCAGCCTCGGCCCCAGAAGTCCCGCCAGAGCctaaaatcaaatttaaagagCGCACCATAACTTCCCTGGGAGACGACACTGGGGAAGGAGTGGCCTTCAAGAAGAGGAAGACGGAGAACGGCAAATCCCGGAACCTGAGGCAGAGGGGGAATGATGATTAGTCTCCTGTCCTTAAGTAACAAACTCTTAACAGGCTTGTAGGATTCCATTGTGATTGGTTGGGGGACACTTTCTGttttaagaaaagaaaggaaaaagctAAGAATAAAAGGACGCCGAATTTCTCCAACTTTAACAGCCCACAGCTGGTCTGCCTGTAAGAGTGTATGGGATTTTCTCCACAATTTACTGCTTTGTACATGTACAGGTGTATTGTAGGTGCTGCTTGTGTTTTGAAGCCATTAGGTTTTCTATCCTTCCGTAattaatgcatttgacaaaaagCAAGACATTATGCAAATAAGTTTCagaataaacattacattttctaaaagtTTATAACCCTCCACCTTTGCACACagtaatatttttgtaatggacTAAGCATAATTAATTTCCTTGACAAGTCACCCTTCTCATTCTATAACTAGGCTTCATATTCTCAACCTCTCCGTGTTTTATCGGGCACCATTTATGACTCTCCTTCCCTTACTGGAGTCAGCATAGTTACATAGCTCAGTTGGTTGTGTTAATCCTCTACAATGTTAAGTTAGGGACAGCTGGTTTGAACTCGGGCCAAGCGGCAGAACAATCAGAGATGAACTCAACAGTTTTGATAATGGGTCCACAGCTGTTTTTTGCCCAAACCACATCAAATCTTAAATGAACTTAAACCTGCTGTGCTACAGAATCTATCAGAGGATTACCTTCAGGAAATGCAACACATTAGAAGACTAAATCAGTGTCATTCTGCGTTGAAGAAGTGACAGAATCTGTGGAACTGGAAAATGATCATGAAATGAGACTAGAGGTTTATTCTTTCATGTACAGACATTATTTTACCGAGATTGAATTTCTGTATCGTTTACATGGAAGTTCAGTGTGCagattttttcaatattattattttcagagctTGTTTTTTACATCACGCAAAACTGCCACCATAGTCCAAGAAATGCATGTCAGACTTTAAGGCTACTGATAAAGGGAATAACGTTTGTGGCGTCGTTCCCAACAGTTTGTACGCAAGTATTTGTCTCCCTGTTCAAACTGTCATGGTGATGATTCTGGGTTTATATTAAAAGAATGCTCCTGAATGTTTTATCAGTGACTTGGTTTCTGTTACAGTCTTTTACAGTGTTGCAAGAGATGGTCTTAATAAATTGATATAATCTAGTATGCATGCCTcgaataaaatgttattttcatggTTGAACTATGTTTGCATTCCAAATATTCCACTCAAGGCAGTCATGTAGAACAGGCTAGATACAAAGGTCCAGAcctctctttcattttcttaatttttaacaGACCAGAACTTTGTTTTAGTTACACCATGGTAACAGTAGGTTTGCATGACGTTCATATAGGCTTTTATGCATCCAGTGCTGCTTTGCTTTCTTAGGTGGCCTTAATCGGTGAGTATTCATGTATATTTCTGTGTATCCTTTTTGGGGGGCTATTTTAGACTTTAACAAGAAAAGTAAAGAACAGCAGTATTCAATAAGATCAGAAAGTATTAGATATATTACTAAAGTATTTGTGACTTTAATGGATAATTATGTTGTTGGTTAATCCAAATTGCTGTATTGGAAGTTAATGGTTTTTGAATGTGTAGGGTTTGTAGCAAATGTACATTTGTCATAGCAGTGTAGATTTTCTAACCACATTGTTCTCCAtgccaaaacaataaaatttgtaaatgtaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K13220 WBP4, FBP21; WW domain-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 148531 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 158224 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 975557 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1135952 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1139509 17418439 ~ 17487050 (+) False AMCG00014553
TU88954 lncRNA downstream 55858 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 268535 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 415268 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 585627 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 585627 19218317 ~ 19222919 (+) False G71283
AMCG00014580 mRNA upstream 1970 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014583 mRNA upstream 17115 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014575 mRNA upstream 146527 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014573 mRNA upstream 151375 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014574 mRNA upstream 230959 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014586 mRNA downstream 4016 18636706 ~ 18638604 (+) True AMCG00014586
AMCG00014581 mRNA downstream 13170 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014584 mRNA downstream 29518 18662208 ~ 18667126 (+) True AMCG00014584
AMCG00014587 mRNA downstream 36116 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014592 mRNA downstream 149367 18782057 ~ 18786527 (+) True AMCG00014592
TU88725 other upstream 352199 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1178106 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2157446 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2493757 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2946771 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4222652 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9202813 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9236013 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9669683 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11218760 29851450 ~ 29851821 (+) True G72605

Expression Profile