RNA id: AMCG00014584


Basic Information

Item Value
RNA id AMCG00014584
length 862
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00014584
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18662208 ~ 18667126 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCCATCCCCAAAACCAAGCCGGTGTCTCATACCCCTCAGCAATGgctaataatgaaaacaaaaatgtctactCTCCTCCTGCAGTTTACCACAGAAGGAGTAACACGAAAGAGCTGCATCCCGAGTATGACTGTCTGCAAACGAGGATCTTTAAAATCATTGTCATAGGCGACTCCAATGTCGGAAAGACCTGCCTGAGTTACAGATTTTGCGGAGGGAAATTTCTTAAAAACCCAGAAGCAACAATAGGGGTGGATTTCAGAGAGCGGACCGTAGAGATCGATGGAGAAAACATCAAGttaCAAATCTGGGACACAGCAGGTCAAGAGCGATTCCGGAAAAGCATGGTGGAGCACTACTACAGGAACGTGAAAGCAATCATCTTCGTCTATGACATCACTAAGCTATCCACCTTTGAGAACCTGCCAGAATGGATCGAGGAGTGCGGCAGACATTCCGTGTCCCCGTCCGTGCCTCAAATATTAGTTGGCAATAAGTGCGATCTGAGGGACAGGTGTCAGGTCTCTACTTCACTGGCCCAGAGACTTGCGGACAGTTACAACTTCCCCCTGTTTGAGACTTCGGCAAAGGACCCCAAAGAGAAGGAGCACGTGGACGCCATTTTTATGACCCTTGCATACAAGCTGAAAAACCACAAACCTTTAAGACTGAAGCAGCCCATTGAATGTAGCATGCTCCAGCTCCCAGAGAGACAGGATGAACCAAATCCATTACCCTGTGCTCAGTCCCTGAGCCCCATGTTGCTGGCTTCCATGTCCAAGATGAAAGGGCTGCTGGGGGTCAGGGTGGGCCAGGACAAGGGCCTGAGCCAGGGCATCACAAAGCTGGGAGAAGACAAC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 184180 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 193873 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 1011206 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1171601 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1175158 17418439 ~ 17487050 (+) False AMCG00014553
TU88954 lncRNA downstream 21422 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 234099 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 380832 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 551191 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 551191 19218317 ~ 19222919 (+) False G71283
AMCG00014581 mRNA upstream 3147 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014586 mRNA upstream 23604 18636706 ~ 18638604 (+) True AMCG00014586
AMCG00014582 mRNA upstream 29518 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014580 mRNA upstream 37619 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014583 mRNA upstream 52764 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014587 mRNA downstream 1680 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014592 mRNA downstream 114931 18782057 ~ 18786527 (+) True AMCG00014592
AMCG00014591 mRNA downstream 136280 18803406 ~ 18845971 (+) True AMCG00014591
AMCG00014596 mRNA downstream 186182 18853308 ~ 18878273 (+) True AMCG00014596
AMCG00014594 mRNA downstream 222646 18889772 ~ 18900200 (+) True AMCG00014594
TU88725 other upstream 387848 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1213755 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2193095 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2529406 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2982420 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4188216 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9168377 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9201577 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9635247 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11184324 29851450 ~ 29851821 (+) True G72605

Expression Profile