RNA id: AMCG00014586


Basic Information

Item Value
RNA id AMCG00014586
length 1899
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00014586
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18636706 ~ 18638604 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCAGTTGCAAGCTATTTCAGTGGCCCAGAGGAGCTGGAGGATATTTCCCACGCTGGAAGTTTGCTGAAGGAGCTCAAGTGTTTCTACGATGCCAAACTGTTAGTGGACGTGACCATTGAAGTGGAGTCGCCGGACCTTGAGCAGCCCCGGGCGGCGGAGAGGAGCAGCGGCGTCGGGGTGAATCATGGGTCGGGGAAGCTGTTCCCTTGCAACCGCAACATCCTGGCGGCGGCTAGTCCATACTTCAAAAGCATGTTCACAGGGGGTCTGTACGAAAGCAAGCAGAAGAAAGTGACCATCCACGACGTGGATGCCGAGTCCATGTCTCTGATCATTGACTACTGTTACACGGGCAAGGTGACCATCACAGAGGCCAATGTGCAGAGACTGTATGCGGCCGCCAACATGCTGCAGCTGGAGTATGTGAGACAGTCCTGCTCCAACTTCATGACCCGGAGGCTCGACCTCTCCAACTGTGCTGGGATCCTGAAGTTCGCAGACACCTTTGACAATCACGATTTGAAAGCCAGGGCTCAGATTTTCGTGGCCAGGAATTTCCAGCACTTCTGCAAGAAGGGCAAAGAGCTGTGTGAATTGACTCCGACTCAGATCAAAGACATCCTGTCGCTGGATAGTCTGGATGTGGACAGTGAGAGGAAGGTGTGTTCGGTAGCCATGCAGTGGATGGAGGCCAACGAGAGTGAGAAGGCGGGGAGCGCGCTGGAggtgctgcagtgtgtgcggTGGCATCTTTTTACAGAAAAGGACAAGGTGTACATTGAGGGGCTGAAGGCACAGCCCTTCATTAAGAATCACTGCATGGGATTTATTGAGTCTGTGACAGGAGAGGAAGGCACTGTGGTCTCTGCAGGTGTGGAAAACCCAACGGAGAGAATAGGCATGAATGCTAAGGAAATGATCCTATTCTTTGGCCACCCCAAGGAACCGTTTTTGTGCTATGACCCCTACACTGGAGATATTTTTTCCATGGTGTCACCTTTGACCAACCTTGCTCTCAACAAGTCAATGGACaccttttctgtttgtgtctcaCCTGAAAATGACCTTTATTTAGCCTCGCAGCATTCAAAGCATTTCTGGGTGTACAATGCCATGCTTAACAGCTGGCAGGAGCTGGCAGAAAGACTGTTGGGCAGGGTGCACATGGACATCGGCTACCTCAGCGGGCACCTCTTCATCTTGGGTGGACGCGACCCTTTGACAGATGCCCGACTGAAAGATGTGGAGTGTTACAGCATTCAGAGGAACCAGTGGGTGTTCGTGGCTCCTCTGCCTCATTccctggggaaaataaaaattgtgacGGTGAACGACCACCTCTATGTGGTGAACAACAGAAGGATGCTTTGCTATGACCCTGACAAGGACCAGTGGCTTAACTGTGCTTCTCTGAAGAGGAGTGAATTTCACAAAGCCTGTGTTTACCAAGACCAGATATTTTGCATATGCGACATCCCGGTCATGAAGGTTTACAGCCCTGCCCGGGGTGAGTGGAGGAGGATTGGGGACATTCCTGTGGATGGCAATACGCACAATTACCAGGTGGTCCAGCATGGGAATAAACTGATGCTCATTACTACCACCATCCCTCACCGGAATAAAAACCGGGTCACCATCCACGAGTACGACCCCGCTAGGGATTTGTGGAAAAACATGGGAACAATGCTGGGGTCACTGAACTATGCCTTGTCCTATGgctttatttgtctttctgcTCGCATATACCCAGCCTGTCTGGAGTCAGGGCAGAACTTCTTCACCGAAGAGGATGACGACTGCAGCGGCTCCAGCGCCGATTGGGACTTTGACGGGTTGACTGACGCAGACTCCGAGTCGGGCAGCTCCAGTTCGTTTTCTGATGAAAACTGGTAG

Function

GO: NA

KEGG:

id description
K10474 KBTBD6_7; kelch repeat and BTB domain-containing protein 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 158678 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 168371 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 985704 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1146099 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1149656 17418439 ~ 17487050 (+) False AMCG00014553
TU88954 lncRNA downstream 49944 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 262621 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 409354 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 579713 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 579713 19218317 ~ 19222919 (+) False G71283
AMCG00014582 mRNA upstream 4016 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014580 mRNA upstream 12117 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014583 mRNA upstream 27262 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014575 mRNA upstream 156674 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014573 mRNA upstream 161522 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014581 mRNA downstream 7256 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014584 mRNA downstream 23604 18662208 ~ 18667126 (+) True AMCG00014584
AMCG00014587 mRNA downstream 30202 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014592 mRNA downstream 143453 18782057 ~ 18786527 (+) True AMCG00014592
AMCG00014591 mRNA downstream 164802 18803406 ~ 18845971 (+) True AMCG00014591
TU88725 other upstream 362346 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1188253 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2167593 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2503904 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2956918 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4216738 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9196899 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9230099 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9663769 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11212846 29851450 ~ 29851821 (+) True G72605

Expression Profile