RNA id: AMCG00014602


Basic Information

Item Value
RNA id AMCG00014602
length 2613
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00014602
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19159929 ~ 19162787 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCACCCGGCAATATTTCCTAGAAGGGGCAGTAACACCGGCAGCGGCAATATCTCAGTGTTGGCAACGCCAGCAGTAACCAGTATTAGCAATAATGTCAATCCGGCTGATGACTACCAGTCTCCCCTGTTGATACAGCCTCCACCCCCGGCCGGGTCTTCCTCCCCGGGGCCCCAGCATCCTCCCCAGAGCCTGAACCTCCTCTCCTCGCAGTCCCAGCTGCAAGCCCAGCCTCTCGCGTCCGCCGGGGCTcagctgaaaaagaaaagtggcTTCCAGATCACCAGTGTCACCCCGGCTCAGATCTCTGTGAGCACCAACAACAGCATCGCAGAAGACACTGAGAGCTATGATGACCTGGATGAGTCACACACGGAGGACCTGTCTTCCTCTGAGATCTTGGATGTCTCTCTGTCTCGGGCCACGGACATGGGGGGTCCGGAGAGGAGCTCCTCGGAGGAGACGCTGAACAACTTCCATGAGGCTGAAACCCCAGGTGCTGTCTCCCCTAATCAGCCTCACCTgtccaaccccccaccccagcatGGCACCATGGTGAATGGGACTATGCACCACAACCAGCagcatcaccaccaccaccaccaccaccaccaccatgggCATCCTCTCCACCATTCACCAGCTGCGCACCCAGGAGTCCTACCCACAGCTGTGTCGGCTCCAGGAGGGgggggtgctgctgctgctgccaccagCACTACCACTACCCCATTGCCCAGCGCTGAACAGAAAATGTCTTCAAATGCTGGGGTTGCTCTTGAGCCCGCCTCTGTGGTGACCCAATCTTTGCCTGCTGGTGCCCCAGGAACTGCCACTGGAATGCTCTCAGTTGCAGCAGCTGCTGGTGTTAGTGGTGCACCTGCTTCCAGTGTAATAATGGGTGGGGCTGTGAACACTCAATCTGGGGTGGCACCCATTGTCCAACCTGCAGCAGTTGCCTCTGTCCCCCAGGTGCAACAGCAGCCGCAACAGCAGCCGCCACAGCCACCACCACCTACCACCACTACCAGTTCCCGCTTCAGGGTAGTGAAGCTGGATTCTAGCTCTGAGCCTTTCAGGAAAGGCAGGTGGACCTGCACTGAGTACTATGACAAGGAGACCCCAACCATGGCGACAGCAACTGCCCCTTCAGATAGCATGCCCAGCCACAGGGTGGTGGAGAGCATCAGACAGGTTGCTCCTGAAAGTGCGACAGGCTCTGAACGCGATAGCACAAGTGGAAGCTCGGTGAGCAGCACAGTCAGCACTCTGAGCCACTATACTGAGAGTGTTGGAAGTGGTGAGGTGGGAGCCCCCTCTGTGTTACAGGCCTTTCAGCAGCAGCCTCCTCAAGCACTGGACTACAGTAGCCCTCAAGGCTTACAGACCTCCCACCCAGGCCTGCCACAGAGTTTGTCACAGTCTCAGCTTGCCCAGGCCCACATGCATCCCCAGGATGTTGCGCACTCTCTTCTGAAGACAAGTGGAGCCCCCTCTGTACCTGCCAGCATCGCCACTGTTCAGCAGCAAGCTCCGATCAACATTGCGAGCATACAGACGTCAATGGGGCACCCAGGCGCTGCCATCGCCCAGCAGCAGCTGGCATATGCACAGAAGGGTCAGCAGCCAGGCCCAGTGCAGAGCTTGCAGGGGGtcccgcagcagcagcagatggGTTACTCTCCACAGCAGCAGTGCACCGCACCAGCCCAGGTACCCCCGGCGCATGTCATGTCTGTAAGTCAAGGAGGGAGTCTGCCACCTGATTTCACACAACACCAACAGATTATTCAGACTCCAGTCCAGCCTGTCCCTTCTGGAATGGGGGTAGGAGGGCAGCAGCCATCACAGGCTCTACCCCACATTTCTGGCACCATGGCCCCCCAACCAGGATCTGGGAATGGTCAGATGATGTCAGTGGGGCAGCAGGCCGGAGGGAGCATGGCCACAGTGGTCAGCCAGCCTACCCCTCAAGGAATTTTGCAGCAGCAACAGACTTCATCACCGCCCCAGATTGCACAGCCTTCCCAAGGTGGGATCCTACAGCAGATGTTGCCTGGTACTGTTTCAGGACTGGCACAGCAGCTGGCAAAAGTCCATCCACAGCAGCAAGGTGTGACACAGCCGCAGTCTCAAATGTCAGTTGAACAGCCACCATTAGCTCAAGGACTAGCCGGCCAGCAGCCTTCCACTATGACCTTGAGCCAGGTTGCAACTAACGTGCCTCCTAATGTTGTCCCTCAGCCCACCATGGGCCAAAGTGCCACGCAGTCTGTACAGAACGGCAGTGTACTTCCCAGTGTTAGTCAGCCCTCCGCAATGCCTGCTAGGGTTAGCCTTCCTGTGGGGCAGGGAGCTGCTGCCCAGTACCCTAACCTGCTGCCTCTCACTGCCGCACAGCTGGAAGATGCCCGTCGCCTTTTCTTTCACGACCAGTCCCTGCTCTCTCTACCCAAACTAGGAGCTGGAGAAGTTGCCTCGGAGGCTGGCACCTCTCTAGCTCAAGATGCGAGCAGTGGTATCAATGCCTTAGCTGCCTCTGCCACCCTGTTACCACTGAAGACCTTGCCACTGGCGGCACACGTGGTGGATGGTGAGGAAGACAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89007 lncRNA downstream 281676 18874605 ~ 18878253 (-) True G71179
TU89001 lncRNA downstream 308818 18850724 ~ 18851111 (-) True G71174
TU88981 lncRNA downstream 472583 18686498 ~ 18687346 (-) True G71160
TU88975 lncRNA downstream 490274 18668801 ~ 18669655 (-) True G71157
TU88951 lncRNA downstream 495298 18664264 ~ 18664631 (-) True G71133
TU89158 lncRNA upstream 28598 19191385 ~ 19191632 (-) True G71284
TU89162 lncRNA upstream 39016 19201803 ~ 19202950 (-) True AMCG00014604
TU89164 lncRNA upstream 49857 19212644 ~ 19214404 (-) True G71290
TU89165 lncRNA upstream 51827 19214614 ~ 19215246 (-) True G71291
TU89166 lncRNA upstream 53426 19216213 ~ 19217037 (-) True G71292
AMCG00014601 mRNA downstream 37103 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014597 mRNA downstream 160912 18971436 ~ 18999017 (-) True AMCG00014597
AMCG00014593 mRNA downstream 213008 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014590 mRNA downstream 382321 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014589 mRNA downstream 393269 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014600 mRNA upstream 11895 19174682 ~ 19184193 (-) True AMCG00014600
AMCG00014604 mRNA upstream 40025 19202812 ~ 19203567 (-) False AMCG00014604
AMCG00014603 mRNA upstream 54935 19217722 ~ 19225230 (-) True AMCG00014603
AMCG00014615 mRNA upstream 168101 19330888 ~ 19338660 (-) True AMCG00014615
AMCG00014614 mRNA upstream 179344 19342131 ~ 19345670 (-) True AMCG00014614
TU87063 other downstream 7497436 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8361782 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9842762 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10775705 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 11001339 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9166952 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10226503 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13100380 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13434675 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13434675 32597462 ~ 32619149 (-) False G73127

Expression Profile