RNA id: AMCG00014605


Basic Information

Item Value
RNA id AMCG00014605
length 2082
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00014605
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19380431 ~ 19384319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGATTTGTACGTGTGATACCTTCGCGGTGCTTTTTACTTTGTTGTGCATTGCGCAAAGTAAAACCACTAAATACATCACTTATGAAGAAGATGCTCCGGGAACAGAGATTGGAAACTTGGCGCAGGATCTGAAGATTGATCCAGCCGAGGATCCCCAGACCAGCTTTCGCTTCATGCAGAAGGGCAGCTCATCCTTGATTCACATGAGAGAGACGGACGGGCTGATCAGCACCGGCGAGAGGATTGACAGGGAGCAGCTATGCGGCCAGGCTCCACAGTGCCTGCTCACGTTTGACATCGTCACCTTTTCCAAGGAGAAGTTTCAACTCGTTCACCTGGAGGTGGAAGTGAAGGACATCAATGACAACTCGCCGCTGTTCCCACACAACGAAACATACATCGAGATTTCGGAGAACGCAGTTGTGGGAACTCGATTTCCTTTGGACATTGCCGTTGACCAGGATCACTACACCATAAGAGTAAGTGACGAGAACGACAATGCGCCTCTTTTCAGCAAATCGGTGTATGAAGTTTCCGTTCTGGAGAACAATATCCCAGGTTCATACATCACCACTGTAATAGCCCGTGATCTGGACCTGGGCGACAATGGCAAGGTATCCTATAAACTCATTGATGGAGAAGTAGCAGGGGGTTATCCGTTGTCCACCTATGTTTCTGTGCACCCACTTTCGGGCGCTTTATATGCGGTGAGGTCTTTTAATTATGAGTCAATTCAGCAAATCGAAGTGACCATCCAAGCCAGCGACAGTGGTTCCCCACAACGATTCAACACTGCTCGGATCAGAGTCAAAATAGTAGACCAAAACGACAATGCCCCTTTCATAGTATTCCCCCCTTTAAAGAATGGGTCGGCTGAGGTGCCCATACCTCACAACGCACCGGCTGGGTACCTGGTGCTCCAGGTCAAGGCGAGAGACTCAGACGAAGGGGTGAATCGAGAACTGTCCTTTCAAATAACAGAAGACCAGGAGATGCTGTTTTCTATCAATAAGGAAACTGGCGCCGTTTATCTAAAACATGGTTTGAACTTTGTCTACGGAGACATGCTGGAAGTCGAGATCGCAGTTAAGGACAACGGAAGACCGTCGTTGTCTTCCAGCGCTGTGGTTCGCTTTCTTGTTACAGAAATGAATCCAGTGGAAGATCAGATACTGCTTGTACTCCAGTCCAGTGATGAAGAGCACCCCGATTTGGACACTTCACTCATTGTGATAATCATGCTGGGTGGAGGCTGTGCTTTGCTACTGATCGCCATTGTAACTGTGGCTGTGTCTTGCAAAAACAGCAAAGGGAAGGACTACGGTATAAAGGaggacacaaaacacaaaatcttTGAAAGAAACCCCCTGGTCATGCACAGCTCACAGGACGCCTCTGTGTACATGGGATCCAGAATCATTGCCAACGATGGAGTTGGACGCCCAGGAGACAGCGATGCTTCCACCTGTCTGTACGAGGAGAGAAGCGGAGATGCAGAAACGAGAgtttacATGTCCAACAACACTTTCAGTCCAAAGCACTTCGAACCAGTGGCCCTGTGGCAAGGGGACAAGTACAGTTTACAGCTGAGTGGTATTGGGAACACCGATCAGCTCAGCACGAAGGATAGTGGTAAAGGAGACAGTGACTTCAACGACAGTGATTCTGACATCAGCGGGGACGGATCCAGGAAGATTCACAGCACCTTCCACCCACGGGCAAATGGTAACTTTCAGACTCGTCACTTTCATTCTACAAGCAATCGAGTTCCTGACCCCAGGGAGAGATACTGTGTGATCCCCACTCACAACACTTCAACTTTTGGGAAAGGATACACGATTGCTTTTTCTCAAGCGCCTGCCTACAATCAGTACGCCGCTTCATTGAAAGACTCCTGTTATCGGACCAACATCCCCAAAACAACAGGTTTGCTGCAGGCTATTCCCAGGACGGAAACGCTGCCACCGCAATTACGTCGCCCAAACCACGAACCAGTAACTCACAGCAATGGACCCGAACAAGCAAAGGATCCACTGAGTACAACAACAGCTGTATCCGAAGTTGCTACTTCGTTTTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 157512 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 157512 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 157512 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 332259 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 478270 18901225 ~ 18902161 (+) True G71183
TU89246 lncRNA downstream 540583 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 802295 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1540249 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 1927271 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2735264 22119583 ~ 22122533 (+) True G71452
AMCG00014611 mRNA upstream 49513 19319869 ~ 19330918 (+) True AMCG00014611
AMCG00014606 mRNA upstream 63176 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014609 mRNA upstream 88681 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014608 mRNA upstream 127824 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014610 mRNA upstream 143642 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014617 mRNA downstream 458833 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014618 mRNA downstream 575270 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014619 mRNA downstream 640202 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014624 mRNA downstream 1262020 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014632 mRNA downstream 2863462 22247781 ~ 22264000 (+) True AMCG00014632
TU88725 other upstream 1106071 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1931978 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2911318 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3247629 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3700643 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3471023 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8451184 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8484384 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 8918054 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10467131 29851450 ~ 29851821 (+) True G72605

Expression Profile