RNA id: AMCG00014611


Basic Information

Item Value
RNA id AMCG00014611
length 1946
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00014611
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19319869 ~ 19330918 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCACGCCGAGCGCCGCGCTTCCGTCCCCGCAGCCCGCAGCTCGTCCAGAACTTTCCGAGCGGAGCCCGACTGAGCAGCGTCTCATGGAGGACCAACGGCAAGTATTCTCGGACAGCCTCATAGACGAGGATCCCCAGACAGCGCTGGAGGGGCTAAATGGGGCTTTGGAGCAGACTTCGGATAATGCCGAGCTGTACTGTCAGCGTGCTTACGCCCATATTCTACTGAAGAATTACACCAGTGCTGTTGACGATGCAAAGAAAGCCATTGAGCTACAGCCAAACTTTGCTCTGGCTTACCTAAGAACAGGAAATTCAGCTTTCTCCTCTTTTGATTCAGAATCAACCTTTCAAGTTTGGATTAAACGATGTGAAGAAAGCCTGGGTTGTAAGTCTATCTATATTCTCTTTTTCTGGTctagGTATGATTGGTACCAGACAGAATCTCAAGTTATTGTCACAATCTTGGTCAAAAATACCACAAAGGATGATGTTAATATTCAGTTTGAAGAGAGAATGCTGCACGCAGCAATAAAACTGCCCTCGGGAGAGGACTTCAATTTGGAAACTCATCTCCTTCACCCAATTGATCCTCagcaaagcacatttaaaattcTCTCGTCAAAGTGGAGCACGTGTTCGCAGTGTCCCATTAGCACAGTGGCAGGGCTTCAGCAGCTGGCTGCTCAGCACAGGTCAGCCTTCACAAAGCCCTGTTTGTTCTGCGGCCTGAAGGCTCCCCAGattgaaattaaaatgagaaagACTGAAGCTATCAGATGGGAGAAACTAGAGGGGGAAGGTGCCCAGGCATGTGTGAAGCACTTCACACCAAGCCAATATCCTTCCTCTTCACATTATACAAAAAACTGGGACAAGCTAGTAGTGGACAtaaaagaggaggagaagaatgAGAAACTAGAGGGCGACGCTGCCCTAAACAAGCTGTTCCAGCAGATCTACTCGGACGGCTCCGACGAGGTGAAACGGGCCATGAACAAGTCATTTATGGAGTCTGGAGGCACAGTCCTGAGCACCAATTGGATGGACGTCGGCAAACGGAAAGTAGATGTGAGTCCTCCCGATGACGCGGAATGGAAGAAGTTTTAAAGGTTTCATCAGCCTTCGAAAAATCAGACGCTTTTCTTTGGCCTTGTGTACCCTTTTGTCTACACAATTGGATGTTTGGTTCATGCACTGAGAATGCACTAGAATTCATTATGCCCCCTTTTCACTTCTTGGCATGTGTTTTAGGAGACCTGTAACAGTGTTTTAGGAAAAGATGTGACGGAGgaatttgttaatttttaaatgaaaaataattgtacatttaatagATTTATAATCTTTTATTAAAGTTGATCTTTTCTGCatcttttttatgtaaatgattTCATAAATGTTGCATTGGAATATTAAACTGAATTCATTATACTCCATTCTACTTTACATAAAGGACATGCTAGTCGGGGCATTAAGTTTTACAGTGTGCATGTAGAGGGTTACTTTACAAAAGAtgatgaagaaaatgtaaataaatttgTCTGATCTGGTTAGTTTGaattgattgtatttaattctgCAGCATTTAATACTTCAGGATATCAATTACCTTAATCTTTGTGTAATTCATACTGTACATGAAGTCCTCTAATTACTTCAAAGTTTATCATATAGGAggataatcaaattaaattactttctcATGGGTGGGGATTGAAGTAAAAGATTGTTACACATCATTTAGTTCACCTTTAGTTCATGCATTGATCATAGAGAGGTTTACAGCATTCTTGTTTATCACTGTTCCtttgctcattttattttctgtactgtCTGATCAGTAGGATGTTACTGACTTCAGACCATAATCATTACAACCATAAATTAccttcattcattatttttgataTGTTGCTTGTCACATTGCTATAGATTTTTTT

Function

GO: NA

KEGG:

id description
K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 96950 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 96950 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 96950 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 271697 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 417708 18901225 ~ 18902161 (+) True G71183
TU89246 lncRNA downstream 593984 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 855696 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1593650 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 1980672 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2788665 22119583 ~ 22122533 (+) True G71452
AMCG00014606 mRNA upstream 2614 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014609 mRNA upstream 28119 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014608 mRNA upstream 67262 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014610 mRNA upstream 83080 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014612 mRNA upstream 103536 19214276 ~ 19216333 (+) True AMCG00014612
AMCG00014605 mRNA downstream 49513 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014617 mRNA downstream 512234 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014618 mRNA downstream 628671 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014619 mRNA downstream 693603 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014624 mRNA downstream 1315421 20646339 ~ 20667180 (+) True AMCG00014624
TU88725 other upstream 1045509 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1871416 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2850756 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3187067 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3640081 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3524424 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8504585 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8537785 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 8971455 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10520532 29851450 ~ 29851821 (+) True G72605

Expression Profile