RNA id: AMCG00014615


Basic Information

Item Value
RNA id AMCG00014615
length 1747
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00014615
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19330888 ~ 19338660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAGTGCAGAAAGTGGACTGGTGGACAATCTGACTCCATAAGTTCATAGGACACCATGGCAGAGACTTCGGAGAAAGTCCCAATTGCTCTGGCAGGACCAGAAGATGTGGAACAATGTTTACCACCTGCGTACACTGCAGTCTCGGTAAAGCCCCCCAACAGCGGCCGTCTTGTGAAAGTGGGAGCTGCCGTGCTTATTGTGGGAGCCGCTCTTTTGCTTTTTGGAGCAATCGGCGCCTTTTACTTTTGGAAAGTGAATGACAAACATGTGTACAATGTTCACTATAGTATGAGCATCAATGGAAAAGTCGAGGAGGGATCAATGGAAATTGATACCGGAAATAACCTGGAGACATTTAGAACCGGAAGCGGGAGTGACGAGGCTGTGGAAGTTCATGATTTTCACATTGGAATTACAGGAATTCGTTTCTCCAGTGGAgagaaatgttatattaaagCACAAGCCAAAGCCCACCTGCCTAATGTGGAGAGCTTGAACAAGGAGACATTGACATTTGACCTGGAAGACGAAATCATGCCAGCTAAGTTTGATGAGGAGTCTCTCATATGGGTGGCTGCAGACCAGCCAGTGAAAGATAACAGCTTCCTGAGCACTAAAATCTTGGACCTCTGTGGCGATCTTCCAATTTTCTGGCTTCGTCCCACATATCCTAAAGATGGTCAGAGGAAGAAAAGGGAAGCTCCGCGTGAAAGACGTCAGTCAGCCGATGCCGAGCGAGTGAACACTATCGGTGTGCCTCGAAACAATGTTACCTCAAGGAGAGTCGCAGGTGAAGAGGAGGAGCCAACCACCGCTTTCAACCCAGAAAATCCCTACCACCGAAGCCAAGAAGATGAAGGAGCCATGACATTCGACCCCATGCTGGACCACAAAGGAATCTGCTGTATCGAGTGCAGACGCAGCTACACACACTGCCAGCGGATATGCGAGCCCCTCGGTGGCTACTGGCCCTGGCCGTACGACCACAAAGGATGCCAAGTTGCCTGTAGGATCATTATGCCGTGCCGCTGGTGGGTTGGGCGCATGTTAGGGATTTTGTAGACCTGCAATTGATGACTAAAACCATAGGAAATTTAGCTCTGACCCAAGCTGAAGAAGCCCTTTAAATCCACCTTACATTAAAcacttttctgaaatgtatttcaatgccaaataatgaaaaaatactttttctggatgtaaataaatataataaagtgcTAACTATATTGGTGTTAAGCCATTGCAAAATTGTGTTacttctgaaactgaaaaggtAGAAAGCATGTCTTTTAGTGTAGTACATGTTACATGAGGACTAAATCGTAATCATGAAACAACCGATATCCAGTTTTACTTGTTTTGCTCTTGATGGTGTAAGCATTATAGAAATTCTCTTCACTTTTCTGcacactttgttttttcctgtaaacatCAATCTGTAATTCCCCACATGTGGTTTGTGATGAACTTGTTAATAAACCCAAACTTTGTTTTCCCGGCTTTCCTTTCCATTCACGGATTTGTTCATGGTCTTTAGATCTAACCACCTtcaatttacatacatttttctggttaattaaaaacaaagtgcagaCCAATTGTAATGTCCAGTAAGTATGTTTAAAATACCGATTAgacatactttaaaatattttcttgttttgtagaCTGCAGTTCAATTCTGTAGATTTCAATGCTTAATGTATCATGAAAAAAATCTATAGCAATGTGACAAGCAACA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89190 lncRNA downstream 74954 19252574 ~ 19255934 (-) True G71315
TU89167 lncRNA downstream 112760 19217904 ~ 19218128 (-) False AMCG00014603
TU89166 lncRNA downstream 113851 19216213 ~ 19217037 (-) True G71292
TU89165 lncRNA downstream 115642 19214614 ~ 19215246 (-) True G71291
TU89164 lncRNA downstream 116484 19212644 ~ 19214404 (-) True G71290
TU89243 lncRNA upstream 454139 19792799 ~ 19880231 (-) True G71360
TU89256 lncRNA upstream 734365 20073025 ~ 20078009 (-) True G71371
TU89264 lncRNA upstream 847969 20186629 ~ 20186968 (-) True G71379
TU89345 lncRNA upstream 2659262 21997922 ~ 21998188 (-) True G71451
TU89356 lncRNA upstream 2882410 22221070 ~ 22221467 (-) True G71461
AMCG00014603 mRNA downstream 105658 19217722 ~ 19225230 (-) True AMCG00014603
AMCG00014604 mRNA downstream 127321 19202812 ~ 19203567 (-) False AMCG00014604
AMCG00014600 mRNA downstream 146695 19174682 ~ 19184193 (-) True AMCG00014600
AMCG00014602 mRNA downstream 168101 19159929 ~ 19162787 (-) True AMCG00014602
AMCG00014601 mRNA downstream 208062 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014614 mRNA upstream 3471 19342131 ~ 19345670 (-) True AMCG00014614
AMCG00014616 mRNA upstream 47955 19386615 ~ 19390852 (-) True AMCG00014616
AMCG00014623 mRNA upstream 1020486 20359146 ~ 20401033 (-) True AMCG00014623
AMCG00014621 mRNA upstream 1113524 20452184 ~ 20458681 (-) True AMCG00014621
AMCG00014620 mRNA upstream 1137689 20476349 ~ 20479063 (-) True AMCG00014620
TU87063 other downstream 7668395 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8532741 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 10013721 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10946664 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 11172298 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 8991079 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10050630 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 12924507 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13258802 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13258802 32597462 ~ 32619149 (-) False G73127

Expression Profile