RNA id: AMCG00014617


Basic Information

Item Value
RNA id AMCG00014617
length 759
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00014617
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19843152 ~ 19844042 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGACTGCATTGATCAAATTCTGGAACAAGAAGACGCACTTAAACTCCACTTCAATTTAGCGTCAAATTCAGAACATTGCTATTCTGCATGGATTTTGAGTGAGATGTACAATGACAAAGCCAATATCATCTACAAGCACTTTCTCAAACCCATCTTAATGGAGATAAAAACTGTGAACAATTACTTTCAGCTAGAAACAGGTGACTCGCTGGGTGTGTTTAAGGATCTTGAGAGATTGTACATGTCGGCATTAAGAAGATTAGTTAAGCCAAGCGTTTTGCGCATGAACAGTAACAGTCAACAAAAGGCGCTGGACCTCAAATCCTCCAGCATTTACCTGTCAGCCAGGATGTGGATCTGGGGACCACATTCCAAAAACAACTGGAAGCCCGAAGTCAGTGATGTGTACCATCAACAAGCCAAGCGTAACAGATTTGTCATGGAATTTTTTTCAAACTCGATCGACAGCCTAGAGACTCAGTGGAGGCTGGTAGCATCAGCAGGCTTTTCGAGTGATCAGACCATTGATGCTTTCTGGATGGAAGTTGAAGCGTTCAAAGATGCTGGAGGAAAAGAGTGTTTTGAGGAATTGGGTGCCATAAAATTGCTGACTCTGCCCATATCCAAGACGTATGTGGAAAGAGCATTTTCTCAGGTGGCACTGCTGAAAGATGAAATGAGAAATCTCATCCGACTACCGCTCCTTTCCAGTCTCATTACAGGCCTGAGCAGGAATGGGTGGTCATCCGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 620233 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 620233 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 620233 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 794980 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 940991 18901225 ~ 18902161 (+) True G71183
TU89246 lncRNA downstream 80860 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 342572 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1080526 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 1467548 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2275541 22119583 ~ 22122533 (+) True G71452
AMCG00014605 mRNA upstream 458833 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014611 mRNA upstream 512234 19319869 ~ 19330918 (+) True AMCG00014611
AMCG00014606 mRNA upstream 525897 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014609 mRNA upstream 551402 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014608 mRNA upstream 590545 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014618 mRNA downstream 115547 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014619 mRNA downstream 180479 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014624 mRNA downstream 802297 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014632 mRNA downstream 2403739 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014635 mRNA downstream 4538725 24382767 ~ 24385815 (+) True AMCG00014635
TU88725 other upstream 1568792 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 2394699 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 3374039 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3710350 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 4163364 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3011300 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 7991461 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8024661 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 8458331 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10007408 29851450 ~ 29851821 (+) True G72605