RNA id: AMCG00014618


Basic Information

Item Value
RNA id AMCG00014618
length 489
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00014618
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19959589 ~ 20021694 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGCCACCCAGAGAGACTTACCCTCACGGAGAAGGGAAAGCAGCTCCTGGGACAGCTGGGTGAAGCTCGGGAGCTAAAGGAGCATACTGACAGGCGCAAGGAGGTGCTCTTCCAGACACAGCTGATTCAAAGTGAGAACAGGAAGCTATCTGTGCTCCTCGATGCCCAGAAGGAGCTGCAGAGAAACATCCATGCCAACAGGGCTCTGGGGGCGGAAGTGGAGATGCTGGTGCAGACTGTGTGCTGGCCAAATGAGGTGGGCAAGTTCCACACGCTCACTGACCTGGACAAGGTGCTCACCCTGACGGAGAAGAGAAGCAGCTCCTGGGACAGCTGGGTGCTGGCGCAGTGTCTCACCCCAGAGCAGCTGAAGGACTTTAGCTACTTCATGGAGGTGGAGCAGTGCCAACTGGACAAGATTTGCCTGGGCGAGGAGCAGCTTAAGGGCCTGAGAGCGAGCCAAGTAAAGTCGACGGATGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89246 lncRNA upstream 34391 19924902 ~ 19925198 (+) True G71362
TU89148 lncRNA upstream 736670 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 736670 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 736670 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 911417 19047958 ~ 19048172 (+) True G71237
TU89263 lncRNA downstream 164920 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 902874 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 1289896 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2097889 22119583 ~ 22122533 (+) True G71452
TU89354 lncRNA downstream 2166945 22188639 ~ 22188927 (+) True G71459
AMCG00014617 mRNA upstream 115547 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014605 mRNA upstream 575270 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014611 mRNA upstream 628671 19319869 ~ 19330918 (+) True AMCG00014611
AMCG00014606 mRNA upstream 642334 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014609 mRNA upstream 667839 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014619 mRNA downstream 2827 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014624 mRNA downstream 624645 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014632 mRNA downstream 2226087 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014635 mRNA downstream 4361073 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014636 mRNA downstream 4670592 24692286 ~ 24759297 (+) True AMCG00014636
TU88725 other upstream 1685229 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 2511136 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 3490476 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3826787 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 4279801 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 2833648 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 7813809 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 7847009 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 8280679 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 9829756 29851450 ~ 29851821 (+) True G72605