RNA id: AMCG00014622


Basic Information

Item Value
RNA id AMCG00014622
length 1329
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00014622
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 20701824 ~ 20708613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGACTCCTACAGTCGAATTCAGCAGGCAAAGAAATCAGAAGAGGAATCGGAACCAGCTGCCACTCCGATCGCATTTTTCACCGTAAAGAACCCAGATCAAAAGCAAAAGGTGGACTGCTACCTGGAGGGTGAGGGCCCTTTCAGGTTATCACTTTATAAGTTATTCAGGAATGAATATTTGCTGGAGAGTATAGGGCCTTTGGACTTTGAGATGAAACAAGATTATGAACTCATGATAGTTGCTAACAGTTCAGTGGGTTTTGTTCTGAAAACACTCATTAAAGTTCAAGTAATTGATGAGAATGATAACACCCCTATTTTTAGGCAGCCTCTGGTTGATTTgttaattgaagaaaacaatGCCCCCAACACCTTCCTGGCCAAACTGCTGGCAACAGACGCAGACAGTGAAATCAGAGGTGAGGTGTTTTATTTGATGGGGCCTGATGCTCCTTCCATTTTCACAGTGGACAAAGCTACTGGAGTCCTCACGGTCTCCACCTCCCTCGAccgagaagaaaaagaaaagtacaggTTCACTGTTAGAGCGGTGGATCGCGGATTGCCCCGGAAGGAAGCTATAGCTACTGTAGTCATCACAGTGCTAGACAGAAATGACAACAGCCCTCGGTTTATCAACAAGGACTTCAGCTTCTTTGTACCTGAAAACTTTCCAGGTTTCGGGGAAATTGGAGTTATTTCTGTCACTGATGCCGATTCTGGAAAGAATGGTTGGGTTGCTCTCTCCATTCTCAATGGCAGTGATATTTTTGTCATAGACACGGGGAAAGGGGCTTTAAGGGCTAAAGTGCCTTTGGACAGAGAACAGCAGAGTTCCTATTTTTTATGGATAGAGGCGGTGGACGGAGGGGAGCCTGCCCTTTCATGCGTCACCATGGTCACGGTTTTGCTTCTGGATGTTAACGACAACCCCCCCTTGGTGTTGTTTCCGCAATCTAATTTGTCCTACATGCTTGTATTACCTACAACTCTTCCTGGAACGTCCATAACGGAAGTGTATGCAGTAGATAAAGACACTGGGATGAATGCTGTGATCGCCTACAGCATCGTTGGGAGAAGTGGGCCAAAGCTAGAGTCATTTGAGATTGATCCAAAAACAGGTAACATTACATTGCAGGAAGCACTGATGAAGAATGACTATGGCTTATACAGACTGCTGGTCAAAGTCAGCGACCAGGGCCAGCCAGAGCCTCTGTACTCCGCCGTCATGGTTAACTTATTTGTGAATGAATCTACATCTTTTCTGTTTGACCCCAAAGTACCAGAGCAGTTCAGTTACATGGAAGGTGGTACTGAGCTCTGA

Function

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89264 lncRNA downstream 514856 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 623815 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 821593 19792799 ~ 19880231 (-) True G71360
TU89190 lncRNA downstream 1445890 19252574 ~ 19255934 (-) True G71315
TU89167 lncRNA downstream 1483696 19217904 ~ 19218128 (-) False AMCG00014603
TU89345 lncRNA upstream 1289309 21997922 ~ 21998188 (-) True G71451
TU89356 lncRNA upstream 1512457 22221070 ~ 22221467 (-) True G71461
TU89373 lncRNA upstream 1517311 22225924 ~ 22228714 (-) False AMCG00014630
TU89398 lncRNA upstream 1598021 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 1848770 22557383 ~ 22557663 (-) True G71512
AMCG00014620 mRNA downstream 222761 20476349 ~ 20479063 (-) True AMCG00014620
AMCG00014621 mRNA downstream 243143 20452184 ~ 20458681 (-) True AMCG00014621
AMCG00014623 mRNA downstream 300791 20359146 ~ 20401033 (-) True AMCG00014623
AMCG00014616 mRNA downstream 1310972 19386615 ~ 19390852 (-) True AMCG00014616
AMCG00014614 mRNA downstream 1356154 19342131 ~ 19345670 (-) True AMCG00014614
AMCG00014625 mRNA upstream 587401 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014626 mRNA upstream 912212 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014627 mRNA upstream 1067793 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014629 mRNA upstream 1403569 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014628 mRNA upstream 1411127 22119740 ~ 22125366 (-) True AMCG00014628
TU87063 other downstream 9039331 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 9903677 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 11384657 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 12317600 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 12543234 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 7621126 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 8680677 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 11554554 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 11888849 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 11888849 32597462 ~ 32619149 (-) False G73127

Expression Profile