Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00014624 |
| length | 1393 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 12 |
| gene id | AMCG00014624 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 20646339 ~ 20667180 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:2001141 | regulation of RNA biosynthetic process | biological_process |
| GO:0035145 | exon-exon junction complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0035064 | methylated histone binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K18404 | TDRD3; tudor domain-containing protein 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU89263 | lncRNA | upstream | 459373 | 20186614 ~ 20186966 (+) | True | G71378 |
| TU89246 | lncRNA | upstream | 721141 | 19924902 ~ 19925198 (+) | True | G71362 |
| TU89148 | lncRNA | upstream | 1423420 | 19218317 ~ 19222919 (+) | True | G71283 |
| TU89156 | lncRNA | upstream | 1423420 | 19218317 ~ 19222919 (+) | False | G71283 |
| TU89157 | lncRNA | upstream | 1423420 | 19218317 ~ 19222919 (+) | False | G71283 |
| TU89305 | lncRNA | downstream | 257388 | 20924568 ~ 20924837 (+) | True | G71414 |
| TU89315 | lncRNA | downstream | 644410 | 21311590 ~ 21312022 (+) | True | G71424 |
| TU89346 | lncRNA | downstream | 1452403 | 22119583 ~ 22122533 (+) | True | G71452 |
| TU89354 | lncRNA | downstream | 1521459 | 22188639 ~ 22188927 (+) | True | G71459 |
| TU89355 | lncRNA | downstream | 1528439 | 22195619 ~ 22195875 (+) | True | G71460 |
| AMCG00014619 | mRNA | upstream | 573269 | 20024521 ~ 20073070 (+) | True | AMCG00014619 |
| AMCG00014618 | mRNA | upstream | 624645 | 19959589 ~ 20021694 (+) | True | AMCG00014618 |
| AMCG00014617 | mRNA | upstream | 802297 | 19843152 ~ 19844042 (+) | True | AMCG00014617 |
| AMCG00014605 | mRNA | upstream | 1262020 | 19380431 ~ 19384319 (+) | True | AMCG00014605 |
| AMCG00014611 | mRNA | upstream | 1315421 | 19319869 ~ 19330918 (+) | True | AMCG00014611 |
| AMCG00014632 | mRNA | downstream | 1580601 | 22247781 ~ 22264000 (+) | True | AMCG00014632 |
| AMCG00014635 | mRNA | downstream | 3715587 | 24382767 ~ 24385815 (+) | True | AMCG00014635 |
| AMCG00014636 | mRNA | downstream | 4025106 | 24692286 ~ 24759297 (+) | True | AMCG00014636 |
| AMCG00014638 | mRNA | downstream | 4221353 | 24888533 ~ 24897009 (+) | True | AMCG00014638 |
| AMCG00014637 | mRNA | downstream | 4260851 | 24928031 ~ 24937965 (+) | True | AMCG00014637 |
| TU88725 | other | upstream | 2371979 | 18271854 ~ 18274360 (+) | True | G71004 |
| TU88601 | other | upstream | 3197886 | 17403511 ~ 17448453 (+) | False | AMCG00014553 |
| TU88385 | other | upstream | 4177226 | 16465681 ~ 16469113 (+) | False | AMCG00014525 |
| TU88218 | other | upstream | 4513537 | 16129525 ~ 16132802 (+) | False | AMCG00014508 |
| TU88058 | other | upstream | 4966551 | 15675631 ~ 15679788 (+) | False | AMCG00014490 |
| TU89430 | other | downstream | 2188162 | 22855342 ~ 22855646 (+) | True | G71525 |
| TU90165 | other | downstream | 7168323 | 27835503 ~ 27841871 (+) | True | AMCG00014704 |
| TU90175 | other | downstream | 7201523 | 27868703 ~ 27879800 (+) | True | AMCG00014703 |
| TU90214 | other | downstream | 7635193 | 28302373 ~ 28304073 (+) | True | G72175 |
| TU90740 | other | downstream | 9184270 | 29851450 ~ 29851821 (+) | True | G72605 |
