RNA id: AMCG00014627


Basic Information

Item Value
RNA id AMCG00014627
length 2787
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00014627
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 21776406 ~ 21779501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCTAAGGGATTTTTACCTGTTGGCCGCTCTGGTTGCCTGTTTTTGGCTAGATCCTGCGATAGCCCAAGAACTGATCTACCCTATTAGAGAGGAGTTGCAAGAAAATGTGCTTATTGGAAACATACCAAAGGATTTGAATATTTCTCATTTCAATGCTGCCACTGGAACAAGTGCTAGTCTGGTCTACAGACTTGTTTCGAAAGTTGGAGATACCCCTTTAGTCAAAGTTTTAAGCAGTACTGGGGAAATATTTACAACTTCGAACCGAATCGACAGGGAAAGACTTTGTCCTGGCCCTTCTtatgaagaaaatgaatgttCTTTTGAGATTGAGGTGGTCATCCTGCCAAATGACTATTTTAGGCTCATTAAGATTAAAATTATAGTCAAGGACACCAATGATAATGCCCCCATGTTTCCATCTCCTGTTATAAACATTTCCATTCCAGAGAACACACTGATAAATAGCAGATTCCCGATCCCGTCGGCCACTGATCCAGACACAGGCTTTAACAGTGTACAGCACTATGAATTGGTAAATGGGCAAAGTGCCTTTGGCTTAGACATTGTAGAAACACCAGAAGGAGAAAAGTGGCCACAGCTTATCGTGCAGCAAAACCTAGACAGAGAACAGAAAGACACATATGTAATGAAGATAAAAGTAGAGGATGGGGGCACCCCTCAAAAATCCAGCACTGCTATCCTTCAGGTAACAGTCAGTGATGTAAATGACAATAGGCCGGTTTTTAAGGAGAGCCAAATTGAAGTTCATATACCAGAAAACTCTCCTGTGGTTTACCTATCAGAGAAAGATCCCGTTAATACAAAAATTGCCCTCATCACAGTTTCTGATAAGGATACAGATGTCAATGGCAAAGTTCTCTGTTTTATAGAAAATGAAGTCCCCTTCCACCTAAAGGCAGTTTATGATAACCAATATTTGTTAGAGACCGCATTATTGCTAGATTACGAGGGCACCAAAGAATACAGCTTTAAAATCGTGGCCTCTGATTCTGGCAAACCGAGCTTAAATCAGACTGCTTTGGTCCGAGTGAAGCTCGAAGATGAAAACGATAACCCTCCCGTTTTTAGTCAGCCTGTAATTGAGTTTTCAGTCCTGGAAAACAACGTTCGTGGTCTGTACCTCACAACTATCAGTGCCACAGACGAGGACAGTGGGAAGAATGCGGAGATTGTTTACCAGCTTGGACCTAACGCCTCCTTCTTTGACTTGGATCGTAAAACAGGGGTTTTGACAGCATCTCGGGTTTTTGACAGAGAAGAGCAAGAAAGGTTTCTTTTTACAGTCACGGCGAGAGACAATGGGACTCCTCCACTACAGAGCCAGGCAGCTGTGATTGTGACTGTACAGGATGAGAATGACAACAGTCCCAAGTTTACTCATAATCACTTTCAGTTTTTCGTGTCAGAGAACTTGccaaagtacagtacagtgggAGTAATCACTGTAACAGATGCCGATGCCGGGGAGAATGCCGCTGTGACTCTTTCCATTTTAAGTGATAATGAAAACTTCATATTGGATCCTTACTCTGGAGTTATAAAGTCCAATGTTTCCTTTGACCGGGAGCAGCAGAGCTCCTATACATTTGATGTCAGAGCTGTGGACAGCGGTCGACCCCCTTGTTCATCTGCTGCCAAAGTAACAATAAACGTCATAGATGTCAATGATAATACCCCTGTTGTTATTTATCCACCATCAAATACGTCTTTTAAGTTGGTACCTCTCTCTGCTATCCCTGGATCCGTCGTGGCAGAGGTTTTCGCAGTGGATGTTGACACCGGAATGAACGCTGAACTTAAATACACTATTGTAAGTGGCAATAACAAGGGCTTGTTTAGAATTGACCCTGTGACTGGTAATATCACCTTGGAAGAGAAACCACCTGTGACTGAAGTTGGCCTTCATCGCCTAGTGGTCAACATAAGTGATCTGGGTTACCCAAAGTCGTTGCACACTCTGGTTCTGCTGTTTCTCTATGTTAATGACACTGTTGGCAATGCTACCTACATTTATGACCTTATCCGCAAAACCATGGAAACTCCTTTGGATAAAAATATAGGTGGCAGCAGTGAGACTTATCAGAATGGGGACTATCTGACAATTATGATTGCTATTGTGGCAGGGGCTATGGTTGTTATAGTAGTCATATTTGTCACTGTGTTGGTGCGCTGCCGTCACGCCTCCAGGTTCAAAGCTGCTCAAAGAAATAAGCAAGGTGCTGAGTGGATGTCCCCTAATCAGGAGAACaaacagaacaagaaaaagaaaagaaagaaaaggaaatcacCCAAGAATTCTTTGTTAAATTTTGTTACCATCGAGGAAACCAAACCTGATGACCCTGTACATGAACCAATAAATGGTACAATAAGCCTTCCAGCTGAACTGGAAGAGCAAGGTATAGGACGGTTTGACTGGAGCACTGCACCAACAACAACCTTTAAACCTAATAGTCCTGACCTAGCTAGGCACTATAAGTCTGCCTCACCACAGTCTGCTTTTCATCTCAAAGCAGACACTCCAGTGTCAGTAAAAAAACACCATGTGATTCAGGAGCTCCCTTTGGACAACACCTTTGTCGGAGGTTGTGACACCCTTTCGAAGCGATCCTCCACTAGTTCAGACCACTTCAGCGCTTCCGAGTGCAGTTCCCAGGGAGGTTTCAAGACAAAGGGCCCCATGCACACCAGACAGGTAAAGGAGCACTTTTACTGGTCTATCAGTACTGCATATAATTGCCCTATCCACCAGTACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89264 lncRNA downstream 1589438 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 1698397 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 1896175 19792799 ~ 19880231 (-) True G71360
TU89190 lncRNA downstream 2520472 19252574 ~ 19255934 (-) True G71315
TU89167 lncRNA downstream 2558278 19217904 ~ 19218128 (-) False AMCG00014603
TU89345 lncRNA upstream 218421 21997922 ~ 21998188 (-) True G71451
TU89356 lncRNA upstream 441569 22221070 ~ 22221467 (-) True G71461
TU89373 lncRNA upstream 446423 22225924 ~ 22228714 (-) False AMCG00014630
TU89398 lncRNA upstream 527133 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 777882 22557383 ~ 22557663 (-) True G71512
AMCG00014626 mRNA downstream 148516 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014625 mRNA downstream 463418 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014622 mRNA downstream 1067793 20701824 ~ 20708613 (-) True AMCG00014622
AMCG00014620 mRNA downstream 1297343 20476349 ~ 20479063 (-) True AMCG00014620
AMCG00014621 mRNA downstream 1317725 20452184 ~ 20458681 (-) True AMCG00014621
AMCG00014629 mRNA upstream 332681 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014628 mRNA upstream 340239 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014630 mRNA upstream 446424 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014631 mRNA upstream 540527 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014633 mRNA upstream 1824108 23603609 ~ 23604731 (-) True AMCG00014633
TU87063 other downstream 10113913 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 10978259 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 12459239 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13392182 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 13617816 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 6550238 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7609789 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 10483666 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10817961 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10817961 32597462 ~ 32619149 (-) False G73127

Expression Profile