RNA id: AMCG00014629


Basic Information

Item Value
RNA id AMCG00014629
length 732
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00014629
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22112182 ~ 22113631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attGCAAAAATGATGTCCATGAACAGCAAACAACCACATTTTGCCATGCATCCAACCTTACCTGAACCCAAGTACACCTCTCTGCATTCCAGCTCAGAGGCAATAAGAAGAGCCTGTCTGCCAACTCCACAGCTGCAGAGTAATATCTTCGCTAGTCTGGATGAAACTCTCCTGGCCCGGGCGGAAGCTCTCGCAGCCGTGGATATCGCAGTGTCTCAGGGCAAGACTCACCCCTTCAAGCCCGACGCTACTTACCACACCATGAACAGCGTGCCATGCACCTCGACGTCCACCGTGCCCCTcgcccaccaccaccaccaccaccaccaccaccatcaccagaATCTAGAACCACCAGACCTCATGGACCATATCAGCTCCCCTTCGCTGGCCCTCATGACCGGTGGACACGACGGGGCCGGTGGTGGCGGAGGAGGGGGTGCTCTCAAACCCATCCTCCAAGCCTggctggaggaggccgagggggcccagagagagaaaatgagcaAACCGGACATTTTTAACGGAGGGGAAAAGAAACGCAAGAGGACCTCGATTGCTGCCCCCGAGAAAAGATCCCTGGAAGCTTACTTTGCAGTCCAGCCCCGTCCATCCTCAGAGAAGATAGCTGCCATTGCAGAAAAATTGGACCTCAAAAAGAATGTGGTGCGAGTATGGTTTTGCAATcaaagacagaaacagaaaaggctGAAATTTTCGGCGACCCATTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89345 lncRNA downstream 113994 21997922 ~ 21998188 (-) True G71451
TU89264 lncRNA downstream 1925214 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 2034173 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 2231951 19792799 ~ 19880231 (-) True G71360
TU89190 lncRNA downstream 2856248 19252574 ~ 19255934 (-) True G71315
TU89356 lncRNA upstream 107439 22221070 ~ 22221467 (-) True G71461
TU89373 lncRNA upstream 112293 22225924 ~ 22228714 (-) False AMCG00014630
TU89398 lncRNA upstream 193003 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 443752 22557383 ~ 22557663 (-) True G71512
TU89431 lncRNA upstream 741718 22855349 ~ 22855619 (-) True G71526
AMCG00014627 mRNA downstream 332681 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014626 mRNA downstream 484292 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014625 mRNA downstream 799194 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014622 mRNA downstream 1403569 20701824 ~ 20708613 (-) True AMCG00014622
AMCG00014620 mRNA downstream 1633119 20476349 ~ 20479063 (-) True AMCG00014620
AMCG00014628 mRNA upstream 6109 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014630 mRNA upstream 112294 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014631 mRNA upstream 206397 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014633 mRNA upstream 1489978 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 1651447 23765078 ~ 24324642 (-) True AMCG00014634
TU87063 other downstream 10449689 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11314035 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 12795015 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13727958 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 13953592 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 6216108 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7275659 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 10149536 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10483831 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10483831 32597462 ~ 32619149 (-) False G73127

Expression Profile