RNA id: AMCG00014630


Basic Information

Item Value
RNA id AMCG00014630
length 6067
RNA type mRNA
GC content 0.41
exon number 24
gene id AMCG00014630
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22225924 ~ 22244915 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACGGCCGCCATTTTCGTGGAGTGAGGAGTGAAGGAAACTGCAAAAAGAAGTCTCATCTAAATCATTTCAGCTTTATGCAATTAATCGTTTCCAAccttaaataaaaactgcagtgCATCCCGATTATAGCAGGcgaattaaacaaacaatacgGTGTTTCGGTCCTCAGTGAGCACATTTCTCCCGTACGTGTCGTCGGGCCTTTGGGGGAATTTCGGCACACATTGCAAGTTGCTATTGGGGGATAAACACGATTTCCATTCGGTTTCATTTGATTCTCCATTCAAAGGGGGCTTAGCCCTGGACGATTTTAGTACGGTtgatcagtttttaaaatgataatagaAAACCTTGATGCTCTGAAGACGTGGCTTTCTAAGACGCTCGAACCTATatGTGATGCTGATCCATCTGCCCTTGCGAAATATGTTGTTGCCTTAGTGAAGAAGGATAAAACCGAGAAAGAACTGAAAGCACTATGCATTGACCAGTTGGATGTATTCCTTCAGAAAGaaacgCAGACCTTTGTAGATAAACTTTTCGAAGCTGTGAACACAAAAAGTTACCTAGGCCTACCTCAGTTTGAGCAGCCTTCTTCAACTGTAAGAATAGAGGCTCACCAGCGCCCAGAAAAAGATGACCTGAAAAAGGAGGAGGTGACTGAGAAGGGCAGAGATGATCGCAAGAAGGATGATCGCTCTCGGAAAAGGGATTACGACCGCAATCCTTCCAGGAGGGATTCTTACAGGGATCGGTACAACCGGAGGAGGGGCCGCAGTCGCAGTTACAGTAGGAGTCGCAGCCGAAGTTGGAGCAAAGATCGTCCCCGTGACAGGGATAGGGACAGGGACCGTGAGAGAGACCGAAGCAGAAGCAGGTCCAGGAGCCAGAGCAGAACAAGAAGCAGAGaaAAGGACACTGGAAAATCAAAGTACGAACATGAGAGAACAGAAAGAACAGATCCTGCAGAAAACAACTATACCCCAGCGACATTGATTTCAAATGTTTCCTCTACCCATTTTCCGGTCCCAACACTCAGCAGTACTATAACTGTCATAGCACCCACCCACCATGGGAACAGTACCACAGAGAGCTGGTCAGAGTTTCATGAAGATCAGCTGGAACACGGCTCATTTGGAAGAGGGCCTCTGCAGAGAAAACGCTGTCGGGACTATGATGAAAAAGGTTTTTGCATGAGAGGCGACATGTGCCCTTTTGACCATGGCAGCGATCCTCTCGTAGTTGAAGATGTGAACCTTCCAGGCATTCTTCCATTTCAAGCACAACCCCCTCCCATTGTTGAAGCTCCTCCCCCCCCTGGCCTTCCTCCACCACCTCCTTTGTTGACTCCACCACCTGTGAATTTGAGGCCACCAGTACCTCCACCAGGTCCTTTACCTCCAAGCCTTCCACCTATTGCAGGTCCACCACCTCCTCTTCCACCACTGCAGCCTGCTGGCATGGATGCTCCACCAAACTCCATGACCAGTTCAGTACCTACAATCGTCACATCAGGGATCCACCACCCTCCTCCTCAGGCACAGCCGCCTCCTCTCTTCACTTCAGAAACCTATGAAACAGATGTGTATAATCCTGAAGCACCAAGCATAACCAGCACTTCAAGACCTGTGTACAGACACAGAGTTCATGCCCAACGACCAAACTTAATAGGCCTCACCTTGGGTGAAGTGGACCTTCCACCTCGAGcagaaaaaacatcaaacaataATAGCATGAGAACAGTCGTGGAATCGGACTCCAGAAAAAGAGTGTCCGGCTCCGTAGAAGGTGGAATTCTTTCAAAGAAGCCTTGGTTTGACAAACACAATTTCGGTAAGCCTAATAATCAAGGCTTTCAAAAGAAGATCCCATTTGCTTCTGATAATGCAAAGTTAGAAGTGAGGAAGATTCCTTTGGAGCTCAATAACATCAGCAAGCTTAATGAGCACTTCAGTAAATTTGGAACCATTGTTAACCTTCAGgtTGCTTATCAGAATGATCCAGAAGGTGCTCTTATACAGTTTTCAGCACATGAGGAGGCTAAGAGAGCGATTTCAAGTACAGAAGCAGTGCTTAACAATCGGTTTATCAAGGTGTTTTGGCATCGAGAAGATGCAGCGGCACAGGTACAGCTTCCTCCACAGgGACCACAGGCTGCCAGTCAGCAAGCTGTTGTTCCAACCCTGAAGCAGTCTGTAAAAGATCGATTGGGTCCCATCCCAACAAGTAATGCCGAACCAACACAGCCTCAAGATCCCAACACCGTTTCTGAGaATGCCACTAAATTGTCTGTGAAGGATAGATTGGGTTTTTCTTCAAAACCAGCATCAGTTACAACAGGAAAGGTGTTGTCGACGTCTACAGGCCTTACAAAAACAGTTTACAACCCGGCTGCCCTAAAAGCAGCTCAGAAAAACATGCCTTTTGTAAACACTGGTAGTACAGATGAAACTGTGAAAAAGAAGCAGATCTTAATATCAAAACTGGAGAAGAATAAATCGATGAAACCTGAAGACAAGGCTCAAATTATGGAAACTCTAGGTACAATGACAAAAAGCATAACCAAATTGAAGGATGAAATCAAATCGATTTCCAGTGGCACTGTACAGAAAACGATAAAAACCAAGGCTCAGacACAGAAAGAACTGCTGGATACCGAATTGGATTTGTATAAGAAGATGCAGGCTGGTGAAGACATTGCACAGCTgagaaagaaatacacacagcTTCAGTTAGAGGCTGCCAAAAGGGGACTCTTGTCCTCGGTGCGTGGTAGGGGGACCCATGCCAGAGGACGGGGATCTCTCAGGAGCCGAGGCAGAGGCATCAGGGGCCGGGGCAGAGGGGCTACAGTCCATGCTGTAGTGGACCACCGACCCAGAGCTTTAGAGATTTCTGGTTTTACAGAATCTGATAGAGTAGACTTACTCCCACATTTTGCACAATTTGGTGAAATCGAGGACTGCCAGATTGATGATTCATCTCTTAATGCTATACTTAAATACAAGACAAGGGCAGAAGCAGAGGTTGCGGCAGTTCACGGAGCAAAGTTTAATAATCTGGACCTTAAACTTGCCTGGCATAAGCCCGTTACCACTCTCACCGCAACTGAGCCCGAGGAAGCAGagccggaggaggaggagTTTCAGGAGGAGTCCTTGGTAGACGATGCTCTGCTTCAGGATGATGATGAAGAGGATGATGACAACGAACCTCGGTCTTGGAGAAGATGAATAGTCCCGGATATTCCCATCATCCCCGGACTGCATACCTGATTTCTTtggaattgttatttttaacagttaGTGATTGACtagaaataaaaattgaatagTTTTGCAAAGGTAGTACTGCCAAAAGTACACGTGTgagttttgtttgaaataatgttGTACATATATTGGGAGACgtgtaaagctttttttattatgtgataCAGTTCATAACCTTtataggttttttgttttgttttgtttttgttttaatttggtctaaGATATTTgaccagatttgttttattgagaGCTTGGTTCCGTATTATGGAATGGTAATACATGAATAACTATGAATGTTTGACGTTCAGAGACAACCATCAGacttgtttgatttttgaaagaaaaacgggaagaaaaaaatgtctgcACAAGTTCCTTTGCATAGTAGGCTTTACTATGATTATATTAGCCTTTTGGTTGTtggttttgtgtatatattttatgtatggaTTTTAATGATGCATTGTATGACTGCTTTGCTTAAATCCTTTTTTGGCTTCATTTGagatgtaaaataaagaattgAAATGGTCTATTatataacagcaaaaaaaaaagaaaaaaaaaaagaagcaataaCAATTTAAGANNNNNaaaaaaagacagaaaaaataaagaccatttcaaaacccccaccccccaattcTCACAAAAAGAGCAAAATTCCATTGTTCCAGAAATGTCTGACATCACACTTTTACAGGTAGGTATGTTAACATACATGTGCTCCCTGAACAAGAGCACTACATGATCTCAAACTGAAAGGTAAGGAAGTAATTGCCTGCATTTGTTAAAGTCTGCAATTTAAGAAGTTTCACATTTagacctttatttaaaaaaaaaaactttaaaagatGTATCTGAAGGCCTAAAAATTCCTTcagttttgaaaacattgtaTTCATCCATATGGAATTGTGTAAACTTGTTCATAAACAGTTTTAATGTGAATATTAGCAGTGAAATTTgaatagtttaattatttactgcAATCTAAAACCtttatgcattgtgttttgcAGGTCACTTGTAAATGAACCCCGACCATTCAATTGAAGCAGCTTTTATGAAgGGCATCCATCATGTAACTCCCGAAAGTGTACCGATGCATGAAGAAGAAGAGAATAACCATGgattagaaatgtatatatgaatgtttaCTTATGCAgaatgatgcattttattttgaaaaatgcttCGCACAACATCGTGTTTACAAAATGAGATTGTAATTAGCACTGGAACattaaatgtcaaaaaaaaaaaaaacttgtatgaTTTGTCTAACACATGCTGAACTGAAGATATTGTACATATTGCAGTGGAGGTATATTTTTGTTATGAAGATTCCTTGTGATTTGGGCAACATATCACTGGTTATAAACCAGTGTCcaggtgtttttattgtttttcatcatgGTACTGTTACATTTGAAAGGTTTAACCTTGCACACTGTAATGCAAAGGAAATGTCACAAACTTTAGATTTACATATGCTGAGTAATCCACAGCCAAATTGGACAAAGTGCTGGTGAGTCTGAATGTAATTGTGACATGTCTTGCTCTGTTAGGCACCATTAccagtgttttagttttttttaactttgtaacattattacattgattttaatattgttgACTATCTCTTGGAACCGTTATGGAGACTACTGCTAAGCATGCTTCATAGTTAatccttaaataaaaaatctaaaatatacagACTTGGAAGTTTTTACAGATCACTAGGAATTAAAACAACTGCTGCTATCCAGCTTTTGGCATTCCAGACAGTCATATTTACCTTTTGGAGTTATTGGAAAGTTAAATTGGTCTCTATATATAGTGACCCACATAACCTACAGGATTGTGGTTGTCAAGAACCACGTCTGGCCTCTCCAGTTTTAGAGGCTTAATGAAGAGGGTAACCTAATCATGTTTCTTATCCTATTGTTATCTGTTATTTGTAACGATCATATTTTCTCTTCTGACAGTTAATGAAGGGGGAAGGCAGGATTGAACTCTGAAATCTGTTTATGAGCTTTTCAGCAATGTTCATGTCATTTATCCATCAGTGTTCACTCCATTTAATCTGGGCTCCTCAGCTGTGCTGACTGCAGCCCCTGTTGTGACTGATTGGCCTGCATGAGTGCTCCCAGCATCTCCCGTCACATCACATTTGCATAAAATAGGACAGATAACCAAATCAGAGCTCAGAAATGAAAATGCTCAGCACCATGCCTGTCACCGTTGTTGCTCAACTAATTGTGAAAAATTTGATTTGCTTGCTTTTCACTGTTAATCATCAAGGTTCCCTCCCAAATTTGCCTTAACTGATCCTGCCCTGCATGTGGCTTTAAACACAAAGTACCCTTGATCCTCCCTCGGGATTACTTACCCAGCCCACCATTTTATAAGGTTGGTTCATCTACTTGGTTAAATTGGGGATTGCAttgtgcacaaacacacaattaaaacaatgtaagcGACAATGTGACTTGTACTTTATAAGCTTAAGTAGTGCAGGACAGTTGTGCAAGAGGTCTAGTTAGTAAAATGTTTCTATTTGAAATACTACCTTATGATATTCTTAATTGGAGAGTCCTGAATAAAATTTCGGATTGGGCAAAATGTTTGCCGAAGGTATAAGTCACTTTAATAAGGTTGTTAAAACTGACTGTTTATATCAACAGAGGAACAtgattgtatgtttaaaaattatttacttaaaaactGGATAAATTGTATCTCGTATGGATTCATGGTTGTCTGGAAAATAAAGGTGGAATAGAA

Function

GO: NA

KEGG:

id description
K13192 RBM26; RNA-binding protein 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89356 lncRNA downstream 4458 22221070 ~ 22221467 (-) True G71461
TU89345 lncRNA downstream 227737 21997922 ~ 21998188 (-) True G71451
TU89264 lncRNA downstream 2038957 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 2147916 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 2345694 19792799 ~ 19880231 (-) True G71360
TU89398 lncRNA upstream 61719 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 312468 22557383 ~ 22557663 (-) True G71512
TU89431 lncRNA upstream 610434 22855349 ~ 22855619 (-) True G71526
TU89444 lncRNA upstream 716954 22961869 ~ 22962070 (-) True G71539
TU89445 lncRNA upstream 739234 22984149 ~ 22984567 (-) True G71540
AMCG00014628 mRNA downstream 100559 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 112294 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 446424 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014626 mRNA downstream 598035 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014625 mRNA downstream 912937 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014631 mRNA upstream 75113 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014633 mRNA upstream 1358694 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 1520163 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 2655176 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 2669388 24914303 ~ 24927812 (-) True AMCG00014640
TU87063 other downstream 10563432 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11427778 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 12908758 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13841701 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 14067335 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 6084824 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7144375 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 10018252 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10352547 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10352547 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062290 False 3916 mRNA 0.50 23 NC_007117.7 4371137 ~ 4401247 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_05539614_05541496.mRNA True 2385 mRNA 0.39 5 CI01000024 5537794 ~ 5541496 (+)