RNA id: TU89373


Basic Information

Item Value
RNA id TU89373
length 2175
lncRNA type sense_over
GC content 0.35
exon number 3
gene id AMCG00014630
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22225924 ~ 22244915 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaccatttcaaaacccccaccccccaattcTCACAAAAAGAGCAAAATTCCATTGTTCCAGAAATGTCTGACATCACACTTTTACAGGTAGGTATGTTAACATACATGTGCTCCCTGAACAAGAGCACTACATGATCTCAAACTGAAAGGTAAGGAAGTAATTGCCTGCATTTGTTAAAGTCTGCAATTTAAGAAGTTTCACATTTagacctttatttaaaaaaaaaaactttaaaagatGTATCTGAAGGCCTAAAAATTCCTTcagttttgaaaacattgtaTTCATCCATATGGAATTGTGTAAACTTGTTCATAAACAGTTTTAATGTGAATATTAGCAGTGAAATTTgaatagtttaattatttactgcAATCTAAAACCtttatgcattgtgttttgcAGGTCACTTGTAAATGAACCCCGACCATTCAATTGAAGCAGCTTTTATGAAgGGCATCCATCATGTAACTCCCGAAAGTGTACCGATGCATGAAGAAGAAGAGAATAACCATGgattagaaatgtatatatgaatgtttaCTTATGCAgaatgatgcattttattttgaaaaatgcttCGCACAACATCGTGTTTACAAAATGAGATTGTAATTAGCACTGGAACattaaatgtcaaaaaaaaaaaaaacttgtatgaTTTGTCTAACACATGCTGAACTGAAGATATTGTACATATTGCAGTGGAGGTATATTTTTGTTATGAAGATTCCTTGTGATTTGGGCAACATATCACTGGTTATAAACCAGTGTCcaggtgtttttattgtttttcatcatgGTACTGTTACATTTGAAAGGTTTAACCTTGCACACTGTAATGCAAAGGAAATGTCACAAACTTTAGATTTACATATGCTGAGTAATCCACAGCCAAATTGGACAAAGTGCTGGTGAGTCTGAATGTAATTGTGACATGTCTTGCTCTGTTAGGCACCATTAccagtgttttagttttttttaactttgtaacattattacattgattttaatattgttgACTATCTCTTGGAACCGTTATGGAGACTACTGCTAAGCATGCTTCATAGTTAatccttaaataaaaaatctaaaatatacagACTTGGAAGTTTTTACAGATCACTAGGAATTAAAACAACTGCTGCTATCCAGCTTTTGGCATTCCAGACAGTCATATTTACCTTTTGGAGTTATTGGAAAGTTAAATTGGTCTCTATATATAGTGACCCACATAACCTACAGGATTGTGGTTGTCAAGAACCACGTCTGGCCTCTCCAGTTTTAGAGGCTTAATGAAGAGGGTAACCTAATCATGTTTCTTATCCTATTGTTATCTGTTATTTGTAACGATCATATTTTCTCTTCTGACAGTTAATGAAGGGGGAAGGCAGGATTGAACTCTGAAATCTGTTTATGAGCTTTTCAGCAATGTTCATGTCATTTATCCATCAGTGTTCACTCCATTTAATCTGGGCTCCTCAGCTGTGCTGACTGCAGCCCCTGTTGTGACTGATTGGCCTGCATGAGTGCTCCCAGCATCTCCCGTCACATCACATTTGCATAAAATAGGACAGATAACCAAATCAGAGCTCAGAAATGAAAATGCTCAGCACCATGCCTGTCACCGTTGTTGCTCAACTAATTGTGAAAAATTTGATTTGCTTGCTTTTCACTGTTAATCATCAAGGTTCCCTCCCAAATTTGCCTTAACTGATCCTGCCCTGCATGTGGCTTTAAACACAAAGTACCCTTGATCCTCCCTCGGGATTACTTACCCAGCCCACCATTTTATAAGGTTGGTTCATCTACTTGGTTAAATTGGGGATTGCAttgtgcacaaacacacaattaaaacaatgtaagcGACAATGTGACTTGTACTTTATAAGCTTAAGTAGTGCAGGACAGTTGTGCAAGAGGTCTAGTTAGTAAAATGTTTCTATTTGAAATACTACCTTATGATATTCTTAATTGGAGAGTCCTGAATAAAATTTCGGATTGGGCAAAATGTTTGCCGAAGGTATAAGTCACTTTAATAAGGTTGTTAAAACTGACTGTTTATATCAACAGAGGAACAtgattgtatgtttaaaaattatttacttaaaaactGGATAAATTGTATCTCGTATGGATTCATGGTTGTCTGGAAAATAAAGGTGGAATAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89356 lncRNA downstream 4457 22221070 ~ 22221467 (-) True G71461
TU89345 lncRNA downstream 227736 21997922 ~ 21998188 (-) True G71451
TU89264 lncRNA downstream 2038956 20186629 ~ 20186968 (-) True G71379
TU89256 lncRNA downstream 2147915 20073025 ~ 20078009 (-) True G71371
TU89243 lncRNA downstream 2345693 19792799 ~ 19880231 (-) True G71360
TU89398 lncRNA upstream 77920 22306634 ~ 22306947 (-) True G71496
TU89417 lncRNA upstream 328669 22557383 ~ 22557663 (-) True G71512
TU89431 lncRNA upstream 626635 22855349 ~ 22855619 (-) True G71526
TU89444 lncRNA upstream 733155 22961869 ~ 22962070 (-) True G71539
TU89445 lncRNA upstream 755435 22984149 ~ 22984567 (-) True G71540
AMCG00014628 mRNA downstream 100558 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 112293 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 446423 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014626 mRNA downstream 598034 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014625 mRNA downstream 912936 21296014 ~ 21312988 (-) True AMCG00014625
AMCG00014631 mRNA upstream 91314 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014633 mRNA upstream 1374895 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 1536364 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 2671377 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 2685589 24914303 ~ 24927812 (-) True AMCG00014640
TU87063 other downstream 10563431 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11427777 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 12908757 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13841700 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 14067334 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 6101025 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7160576 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 10034453 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10368748 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10368748 32597462 ~ 32619149 (-) False G73127

Expression Profile