RNA id: AMCG00014631


Basic Information

Item Value
RNA id AMCG00014631
length 2246
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00014631
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 22320028 ~ 22332810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagCTATTTAAAGTCAGTGTGGAGAACCAGAATTATCTGGAATCAAAGAGCAAGAGGAACAGAAAATTGCAGAGGTCTGGGCAGTCGCTGGCACAGAGCAGGGTGAATGCAAACCCTGTCGAGCCCGATGATCTGGGACCGGATACGATATATCCTCTGGGACAACAACTGTGCTGTTCCTCCTCACTTCCACATGACGCCATTTACTGCATAAACGCGACCTCCTCcggaaagcagaaaaaaagagaagcgCAGACGAGAGCGCCTCGAAAGCACCTCAGTGCGCAAAGCAGCCAAACCCCGCGACCACAGCAGCGCTTCTGCAGGCTCGTCCAGCCGCGCACAGCCGCGCACAGCCGCCCCCGGGCCGACACAGCGCCCTGCCGCAGCGGCGCGACTCTTCCACGGAGCGGCCCCGCGTCGCGCCCGCCTCGCTTACTGGCGCCTCTCTGCTCGCTAGAGTTGACTTCAGATGTGTTCTACGCCTGCTGGAGGGATAACTCTTCAGAGTAAAGATGGGGACAAGAACTCAAAACGGCAGTGGTTCTCCTGCCCTGCTGCATCTTCTGCATGACAGTGGAAGGCAGCATGCAGGAGAACCGGATCCTAGGGAGGCGTTGGCTCAACAGGTTCAGGTGTTTTCACTTGATCAGATAAGGATAATTAGAAGTACCAATGAGTACACAGAAGGACCGATGGTGGCGCCTAGACCTGGGAGTAAGCCTATTGCTCCTCAGTCTTCTCAACATAAAACAGACAGGGTGCCCAGCTTGACAAGTGAGCAGGAGCAGCAGAGGTTTAACCAGAGGGGTCCTCATCACCATCACCACACGAATTCTTCCCGGACAGCTTTGACCCGAACTACAAGTACAATGAGCACTGGTTCAAGGAGTAGTACAAGGACAAGTACAAGCAGTACTTCCTCTGAGCAGCGGCTCTTGGGGAATGCATCCTCTGACCAGATAATCAGGGTGCAGCCCAAACCTTCAGAGCTGAAGTCGGAGGAGCTTAAGCCCGTCGCCGCCGAGGAGCGTGGAAAGCATGTGTACCGCTGCGAAGACTGTGGGAAGTGTAAATGCGAGGAGTGCACTTACCCACGGGTTCTGCCCGCTTGTTGGGTCTGTGACAAACGCTGCGTGTGCTCCGCGCAGAACTGTGTGGACTACGGTACGTGTGTCTGCTGCGTGAAGTGCCTCTTTTACCACTGTTCCAATGACGATGAGGACAACTGTGCAGACAATCCCTGCTCTTGCAGTCAGTCCAACTGTTGTGTTCGGTGGTCTGCCATGGGTCTCATGTCCCTCTTTCTGCCGTGCTTGTTGTGTTACCTTCCGGCAAAGGGGTGCCTTAAGCTCGGCCAGGGCTGCTACGACCAGGTCAAGCGGCCTGGCTGTAGGTGCAAAAACACCAACACCGTCTGCTGCAAGATTTCCAAGGTCCCAGCTCGGAATTTGGAAAAGCCAACGTAGGCGGCACCTTATCACAACGGATGTGCCTCATCGGCAACAAACTATTAACAAAGTTGTAGTTCTGGCACTGTAGTACCAGTGGGTTGGGGTTTATGTAGCTGTTTGAAGTGGCTCGCTTTCTGTTTTTTAGCCACCATTTTAACTAGGAATGCTTGTGGATAAAGCCCACCTTTTATTGAAGCTCAAGTCCAAAATTTAGTCGTATGGACTTTTAATACAACTGATAAGCTAAAGCTGCAAACTCTCCTGACCAATTGTTTGTGAATAGTATttgcaaaatatgtaaattagcaaattactttttctgtcagagataatgttttatttttgtatatataatatttcaacTGTGAAAAACATGGTGCCAAACCAGTGGCatcttgacaaaaaaaaaatgatactaATATGTTGTACATTCGTTTTGAATGTGAATCAATCAGTACTTTGTAGATTATATTTTACCTTACAAAAGTCAAACATTACATGAATCTTATCCCCTCTACTATACATGTAAATTGTACAGTGACCATAAGAAACAGcctttattttctcatttttcaacatattgtttagtgtaaaaaatatttatttgaagttttattattttataaaaaagaaatatttattttaagaggcATCTTAAAAATATCAccctattttaaaataaaagacctTTGTTGTTGCTGCAAATAAGGGTGACACAAATCAGAT

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0060841 venous blood vessel development biological_process

KEGG:

id description
K17383 SPRY2; protein sprouty homolog 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89398 lncRNA downstream 13081 22306634 ~ 22306947 (-) True G71496
TU89373 lncRNA downstream 91314 22225924 ~ 22228714 (-) False AMCG00014630
TU89356 lncRNA downstream 98561 22221070 ~ 22221467 (-) True G71461
TU89345 lncRNA downstream 321840 21997922 ~ 21998188 (-) True G71451
TU89264 lncRNA downstream 2133060 20186629 ~ 20186968 (-) True G71379
TU89417 lncRNA upstream 224573 22557383 ~ 22557663 (-) True G71512
TU89431 lncRNA upstream 522539 22855349 ~ 22855619 (-) True G71526
TU89444 lncRNA upstream 629059 22961869 ~ 22962070 (-) True G71539
TU89445 lncRNA upstream 651339 22984149 ~ 22984567 (-) True G71540
TU89467 lncRNA upstream 1079806 23412616 ~ 23412984 (-) True G71561
AMCG00014630 mRNA downstream 75113 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014628 mRNA downstream 194662 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014629 mRNA downstream 206397 22112182 ~ 22113631 (-) True AMCG00014629
AMCG00014627 mRNA downstream 540527 21776406 ~ 21779501 (-) True AMCG00014627
AMCG00014626 mRNA downstream 692138 21620825 ~ 21627890 (-) True AMCG00014626
AMCG00014633 mRNA upstream 1270799 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014634 mRNA upstream 1432268 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014639 mRNA upstream 2567281 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014640 mRNA upstream 2581493 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014641 mRNA upstream 2628136 24960946 ~ 24961689 (-) True AMCG00014641
TU87063 other downstream 10657535 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 11521881 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 13002861 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 13935804 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 14161438 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 5996929 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 7056480 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 9930357 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 10264652 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 10264652 32597462 ~ 32619149 (-) False G73127

Expression Profile