RNA id: AMCG00014637


Basic Information

Item Value
RNA id AMCG00014637
length 3296
RNA type mRNA
GC content 0.39
exon number 9
gene id AMCG00014637
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24928031 ~ 24937965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACAGCTGGATTCGGCgtccctccccttctcttctCTCATTGGCTCGATGGACAGACAGGTGGCCAACGCTGCCGGCTGATTGGAGAATTGAGCAGTCGATCAAGTTGTGGACGCGAAGGGAAATTGCCTTGTAGTAGTAGATTGATTTCCATTCATTGCTATTTGGTTTTTTTATACGGAGCTCGGTGAAATGTTCACAACAATTATAATGCATCCAGTGTTGCTGTTGATCTTTACATGTGTTCATGTACTTCCGTCAACACACGGGAAAACTGTGTCGGGAGTTTTCAGAAGCGAAGCTGCAAGACAGGACACCGGCCAGTACATCACAGCATTTGTGTTTCATGGAGAGAGCGGTTTGATAAACTGTCGACTGGAGGATGTCCAGACGGCTATAGAAAAAGAAGCCAAACTGATCCTCTTCCGAGAGCAGTCATGGCTTAACTCGCAAGAAGGCTATGACAATCTGAGCTGTCTGGAGCACCTTTCAAAAGCTCAGGTCAAAATTGCTTTGACAGAAGAAGAGCACAATCACACCATGCCCGAACTTCAGTTTCCTCAGAAATGGCATTTAATGTATGTGGATCGATACACCTGCCAAGAGAGTGACATCGATACTGTGTCCAAAGACATCGGATTTCAGATTCAGATGTTTAACCCCGATGCTGCGGGAAATGCTTTGGATCATTTCAGTGCTGAGAAAGCTGGTTTGCACAACTTCTATTTCCTCCTCATCCTCGCCTACTTCGTCGCTACCTGCATCTACGCTCAGCCACTGTGGCAGACCATCCATAAAGGGGGACCCATGCAcaccattttaaaagttttgtcCTCTGCTTTGCTGCTGCAGGCAGGGTCTGCTCTATTTAACTACATTCACATGGCAAGATACTCAAGGGATGGCATTGGAGTTCCCATGATGGGCAGCCTAGCAGAAATCTGTGACATGGTCTCCCAGATTCAGATGCTGTACATGCTGCTTAGTTTGTGTATGGGCTGGACACTGGGAAGGAGTCGGAAATCCCAGAGCAAGCCATTACAGTGGGATACCTCTCCCACCTCTACAGCCATCGCTCTCACTGGGGTCCTCACTCAGGGTGCATTGTTGCTTTGGGAACAGTTTGAAGACACGGAGCACCACAGTTACCACGCCCACCGCAGTATGCCTGGCTTACTCCTGATTGGTTTAAGGGTTACTCTTGCCTTGCTGCTAGCCTCTATTCTTTACCAGATCATTACAGCGGAGAGAAGTGCACTTAAAAGAGACTTTTACTTGAGCTTTGCCAAGGGATGTTTTTTATGGTTCTTGTGTCATCCTACTCTCGTGGTTCTGTCATTGGTGTTCAATGACTATCAAAGAGAAAAGATCATTACCATCGGCGTTATCCTTTGCCAATCCATATCTGTGGTAATATTGTATAGACTCTTCCTTTCCCGCAGTCTGTACTGGGAAGTTTCATCGCTGTCTTCAGTCACGTTACCACTAACCATGTCCAGTGGGCACAAAAGCCGATACTACTCATAACCCGAAACTATTGCCAAGGAAAGAGCTTtctcaaaaaaaacaaaaaagatgtcTAGAGTGAAAAGCACTCCGTATCACGAACCCTGACTGAGAAAGATTCCTGTCTCACTTCTTGGACGTACGGGAAGTCCCTTGTTTTGCATGTGATAGGAATAAGATTCCAGAATCGTTAATTTCAGAACCTTGATTTTTAATAGAACCCATTCTAAGCTTCCTTTGTGTTGGAGAGGAGTAGGAAACCTGCTGGTCTTGATGCTATAAAGACTgagaagtatttaatttatagaGCACATAATGAAACTGATTATTTTGTCTGTGTATGCATTGCCTctctggaaaatatttttaaggCTGTAACCTTTTAGGGAGatttttatagtttgttttgttttttaaaggaaaccGTTGTATTTTTTACAGGATTCAAATACTATTCAACATTAACAGTATTTGCAAAGAGTAAAAGAGTGGTTAGTGTATGGCAGAAGACTTATAATAAAATGCCATATCATAAAGGGTGACCTGATTTTAGATAGATAAggcacatatttaaaatgctgagGTGTAGTCAGAAAAGGCTTGAAAATACAGGGTAGCTGTAGCCGTACAGCTGCTCTTGAACACTTGAACCAAATATTTACTCACGTCTTTTCAACGAAACAGGTGGAAATGGTGATTCTTGAACCAAAGCATCACAATGAAAGGATGTTAACTTGAGtacatgcatgtttaaaaaaatctaactgaAATTATTTATGTACATCACTTGTTTACAGGACAGACTTTCtgttaaaactaaaaattaGACAATCATTCAAGAAAGGGGTTCACCCTTTTAATTAGAAcagatttgctttttttatCTCACTGATTTGATGAAAATCTCTAAAAAGTCTCTCCGTATTTTAAGCAAGTATTTGATGAGAAAATCTTgacaattatacatttatgtcTCAGTGCGTTTCTtgctaaatatattaaaaggcaTAATTAAGGCATAaccagttatttttaaaagttaaaaaccATAAAGACAATACACAATGCCTAAAAACCATAGGACAGTGaccaaatgtatgttttttgtttttgttttaaaatacggGTTTCTTTCTTCTCTTAGCATCCAGCACCTCGTGGAATCATTACTGGCATTAGTTTAAGTCCTGTCACTTCAGTTTTATATGTACCCATCCCACTTTCAAAGATCTTGCTTGGAATGTGAGATTTAGTAAGGGGGGTGGCCACAGATGTGTATAAGGACAAGTGCAAAATACTATTTCAAagtgaattaaaacataaatggatgttttaaaaataaattaaaaacatagtaGAGGTTTAACATACTTGATTGCAATTACCAAACTTCTTATTTCCCTGGAAGATGTGCATTACAAAAACATGGTCAGGTTATAAATGGCAACAGTATGTGTTAAATCTGCAGCATTTGAGGTGTTAAAATTTCACAAGTGCCTGTACAGAATGTAAAATATGTCATAATTTAgacaatccttttttttttctggccaatacaaatgtatttcaaacaatcattgtgattgattttttttaagtgtttaaaaccTTATGTTTACTTTCCATTctaagaaattgtattttatttattaatgcaataaaaacaaacatttatgttAGTGACAGAGTTATTGTTATGTCAAACGATGCATGTTTTATATAGGATGGTCTTAAATGCACTGTAAGCTGTATTTGTAGatgtaaataaatgtcagaTTGTACATATGCTT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019236 response to pheromone biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89508 lncRNA upstream 395070 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 594734 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 1019382 23908385 ~ 23908649 (+) True G71584
TU89490 lncRNA upstream 1222597 23705163 ~ 23705434 (+) True G71581
TU89482 lncRNA upstream 1330708 23597118 ~ 23597323 (+) True G71574
TU89583 lncRNA downstream 144694 25082659 ~ 25082878 (+) True G71662
TU89593 lncRNA downstream 171191 25109156 ~ 25109378 (+) True G71670
TU89672 lncRNA downstream 595377 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 767493 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 807838 25745803 ~ 25748408 (+) True G71772
AMCG00014638 mRNA upstream 31022 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014636 mRNA upstream 168734 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014635 mRNA upstream 542216 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014632 mRNA upstream 2664031 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 4260851 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014643 mRNA downstream 149049 25087014 ~ 25102638 (+) True AMCG00014643
AMCG00014646 mRNA downstream 186129 25124094 ~ 25126045 (+) True AMCG00014646
AMCG00014644 mRNA downstream 211838 25149803 ~ 25163635 (+) True AMCG00014644
AMCG00014648 mRNA downstream 307448 25245413 ~ 25245961 (+) True AMCG00014648
AMCG00014649 mRNA downstream 435421 25373386 ~ 25374072 (+) True AMCG00014649
TU89430 other upstream 2072385 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6653671 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7479578 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8458918 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 8795229 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2897538 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2930738 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3364408 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4913485 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5826386 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile