RNA id: AMCG00014639


Basic Information

Item Value
RNA id AMCG00014639
length 3487
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00014639
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24900091 ~ 24910282 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCACACCACCGACCTCATGCATATCATCCAACCTTTTTTTTAGGTTTCTTTGCATCCTTTATCCCACATTGCTCACAATCAGGATTCATGCAGCGGTTGTCAGGTGCTCACCACGGGACCTGATTTAATCCTGCTGAACAGCCCTCTGCTCCATATAAAAATAGATGCTTTTCCCCCCCTCAGTAGCCCCAGCAGTGCTTTTTTGTTAAGACAgtcaatatatttatgaataataaCTGAAAGGCGGGGGCCAATTTAAGACGCTCCCTTCTTTACAGTGGACCTTTGAAGTGCCAGCGCTTTTTAATAAGTCTTAACTTGCAGCAAATAGGCGAGTCGTCTTTCAGAGCAACTTCTGAGCCGCAGAGCGGGTCTGTTGCACGCATCGGGGAGCCATGCATTGCGGGCTGATCGCTGTGCTGGTGTGCGTGTTGAGCGCACAGCGGCGCGCCGTGCAGGCGCAGTTCCCCCGGGCTTGCTGCACGGTGCCGGCGATCGTGTCCAAGCAGTGCTGCCCGCCGCTCGGCGCCGACCCGGCCGACCTGTGCGGCTCTCTGTCGGGCCGGGGGAACTGCACCGACGTGCGGGTGGACAACAAGCCCTGGGGTGGGCCATACCGGTTACGAAACGTGGACGACCGGGAAAGATGGCCTTTGAAATTCTTCAACCGGACCTGCCGCTGTTctgggaaTTTTGCTGGGTACAACTGTGGCGAGTGTAAGTTTGGCTGGACCGGGCCCAGCTGTGAGCAGCGCAAGCCTCCAGTGGTGCGAAAGAACATCCTTTCCCTGACAGCGGCCGAACTGGACGAGTTTCTCGATGTCCTCGACCGGGCGAAGAACACCACCCACCCGGACTACGTCATCGCCACTCAGCACTGGCTGGGCCTGCTGGGGCCCAACAGGATGGAGCCACAGTTCAACAACATCTCcatatataactattttgtgTGGCTTCACTACTACTCTGTGAGAGACACTCTCCTAGGACCTGGGCGCCCATTCAAAGCGATTGATTTTTCACATAAAGGGCCTGCTTTCATCACCTGGCACAGATATCACCTGCTTCTGCTGGAGCGAGATCTGCAGAAACTGACTGGGGATGAAACATTTGCGGTTCCCTACTGGAACTTTGCCCTAGGGACGAGCGAATGCGATGTGTGCACAGACTCTATCTTCGGAGGACGCCGGGCAGACGACCCCTCTCTCATCAGTCCTCAGTCCAGATTCTCCAAGTGGGGAATTGTTTGTGACAGtctgGATGAATATAACCGTTTGGTGACCCTCTGTAATGGGACGAATGAGGGCGTTCTGAGGAGACAGCCGTTCCAGAGCTCAAACATCACTCTGCCGACCATGAACGATGTGAGGAACTGCCTGACGCTGAAGGATTTTGACAGCCCTCCGTATTTTACAAACTCCAGTTTTAGTTTCAGGAATGCTCTGGAAGGCTTTGACAGGCCCAGTGGGGAGGTGGACTCCTCTGTGAATAATCTGCACAACCTCGTTCATGCCTTCCTCAATGGGACCAGTGCTTTGTCCCATTCTGCTGCTAATGATCCCATTTTTGTTGTGCTGCATGCTTTTACTGATGCCATCTTTGATGAGTGGATGAAGCGGTTTGTGCCTCCAAACTCCAGCTGGCCCGAAGAAATGGCTCCTATTGGTCACAACAGAGATTACAACATGGTGCCGTTCTTCCCCACAGTGACCAACGAGGACATCTTTAGCAACTGGGATGCAGATGACTCTGCCGCCACGGTGCTGCTGGGATCTACTGTTGGCGGAGCGTTCCTCGGTCTGCTTGTTCTGCttgttctgctgctgctttaTGTGCACAGGAGGCGCAAAGAAGGCTTTGAACCCCTTATAAAAGCCGAATTCACAAACAAGAAGTACACGGAAGACGCATAACCTTGCTAACTTTACAGGTATTACACAGAGTCTCCCAGCTTAGTTTAatctgatttacaaattaattagttTAGATCCTGAAAATTTAATGAGAAATAGCAAAGCTTTATACATAGAGCGGTGTGGCCCGGGTCAAACTTTAAATTCTTTCAAGTATGCGGTTTCTTAAGAGTTAAATTGTATGGAATAGAAACACTACATTAAATTGGCCTTTGATTAAATCCAGTGAGATAGCAACCACATTAATAACCCTTGTATCGTATTGCCTTTTGAAGTTATACTGCAAAGGAAgcagcataatttaaaaaaacactaggATGAAAGAATCAGAAGCGGCTGTTGAGATGACTGTTGAGTGTTTGCAATTgtctgagattttttttctcctcattaCAATctgattgtattcatttaaaaaaaaaaacgcaccGAAGGGCACAACAGGTGGCTGTGGCATctcttaaaaggaaaataatctataaaagGCACAGTCAAACTTTGTCCATgggttttgtatttaaaagcattcgTGAACAGTTTTTCAAGGCCTGCTTCTGAGTTACAGTGGATGGGGGCACAGCTGACTGTTTACTACCTGTTATTACTGTATTACCAAGTCTCTTGCTGACAGTCTCTCTGGGGTCCATTATTGACATAATAAACAGTCCTTTAGAGCTTTAAAACATGTTGCAGCATTTGCCACTACCATTGCTGAATATGCCAAAGATGGCCTGTCCCAACAACTGCTCTCCTTTTATCTgttctcaaattaaaatgatttcaagtttttttttttttttttattattccttaaaaatgtacagataaCATTCAGGCAAGATCGATTGTCCTTCTGAGCTGATGGGTTGGAATGTGAAATGTGGGAGAAGGCCGCTGCACCTGTCAGTGTTTGGTGTGCTGATTTGTGTTAACTACTCCACAGTTTacaaggtttttatttgttttaaaacttcaaTGTTGTTGACTGACAGACAtcttaaacttatttttttgggggCTTATCCTTTAGAAGAGATTACAAAGTCATAAATGGAGTCAGACAGGAAGCTAAAGCCTTTAACCAAAAAGCAAAGAAAGTGTAAGTTCAAAATCTAAATGTATGGAAGCATTTATAGGAAATGCTACAAACAGTGTTGTGAACTAACTAGTTTTCTGTAAAAGAATGGCACACAGGTTAAAGGTTGTGGGGAAGGTTTTAATAATATCCTGTCATCAGTGCTTTAAAACCACATCAAAGGTAAGTCAGCCAGAATCAGCAGactcatttttaataaatgtttattagcACACTCTCATTATTTGTCTGTATACAAGAGTAAGAAAACCCAAATGCAAACCATTGTAATCGTTTTAAAAAAACTAAGGCATGTCTGCTTCTACGACGTGTGAGCCGTATAAAACTTGAACCTTATTTGCTTAAAGCAGCCTGTTCACCAGTAACTTGAAATATTTTCCAAACACTATCGATTCATACTGTAGTGCACAGTAAAATACCGTTGGATGGATATCTTAACCAATTTTTAAtgcagtgactttttttttttttttttt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K01827 DCT; dopachrome tautomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89502 lncRNA downstream 743943 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 819344 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1194225 23705566 ~ 23705866 (-) True G71583
TU89491 lncRNA downstream 1194671 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 1487107 23412616 ~ 23412984 (-) True G71561
TU89670 lncRNA upstream 577944 25488226 ~ 25490651 (-) True G71723
TU89673 lncRNA upstream 598315 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 620656 25530938 ~ 25533180 (-) True G71727
TU89693 lncRNA upstream 680536 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 1117253 26027535 ~ 26028500 (-) True G71835
AMCG00014634 mRNA downstream 575449 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014633 mRNA downstream 1295360 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014631 mRNA downstream 2567281 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014630 mRNA downstream 2655176 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014628 mRNA downstream 2774725 22119740 ~ 22125366 (-) True AMCG00014628
AMCG00014640 mRNA upstream 4021 24914303 ~ 24927812 (-) True AMCG00014640
AMCG00014641 mRNA upstream 50664 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014642 mRNA upstream 94223 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014645 mRNA upstream 220056 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014647 mRNA upstream 255664 25165946 ~ 25239586 (-) True AMCG00014647
TU87063 other downstream 13237598 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14101944 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 15582924 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 16515867 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 16741501 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 3419457 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 4479008 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 7352885 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7687180 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7687180 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073675 False 1967 mRNA 0.51 8 NC_007120.7 53327332 ~ 53352469 (+)
grasscarp (Ctenopharyngodon idella) CI01000048_01395910_01401127.mRNA False 2548 mRNA 0.48 8 CI01000048 1395230 ~ 1401486 (-)