RNA id: AMCG00014640


Basic Information

Item Value
RNA id AMCG00014640
length 1311
RNA type mRNA
GC content 0.40
exon number 12
gene id AMCG00014640
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24914303 ~ 24927812 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTCCTGGTTTACGAAACACAGCCGCTTTAAAAAGCCAATATGGCGCCCTGGCTTCGGAAGTATCAGTGCATCACATGTTGTCATCTCCCTCGTAGAAACCTATCCAGACTGGCTTATCATCAATTTAGACAAGcTTGATTACTGTGCCAGTTTAAAGAACCTTACATGCATTGAGCAGAAAGCAAACTATAGATTCATCCAGAGTGACATTTGTGATTCATACTTCATAAAACATCTATTTGGAACAGAAAAGATAGATATTGTCCTTCATTTTGCAGCTCAAACACATGTTGatcATTCCTTTTGGTTTTCCTCTGAATTCATGCATGTGAATGCCTATGGTACTCATGTTCTGGTGAAGGCTGCCCATGAAGCTGGTGTTGAGAAGTTCATCTATGCAAGCACTGACGAAGTGTTTGAGTCATCTCCAAGAAAACCAACAAATCCTTATGCAGCATCAAAAGCAGCTGCAGAGCAGACCGTTCTGTCATTCTGGGAGAAGTACAAGTTACAAGAAGCAGTAATGTCTACGGACCCCATCAATTCCCAGAAAAGgTCATTCCAAGATTTATATCCCTGCTACAACTTAACAGAAAATGGTCTGCAAGCACGGAATTTTCTATTTGCTTCCGACGTCACGGAGGCCTTTCTGACTGTTCTGGAGAAAGGCGTTCCTGGAGAGATTTACAACATGGGGACCAGGTTTGAGCTGTCAGTCATCCAGCTCGCCAGAGAGTTAATTAAGCTGattaaaaacatttctacaGAATCAGAAATGCATGACTGGATGGATTTTGTCAATGACAGACCTTACAATGACTTGAGGTATCCAATGAATTCAGAGAAGCTGGAGAGACTTGGGTGGAGGCCTAAAGTTTCATGGAAAGAGGGGATCAGAAGAACAAttgACTGGTACAGTGAAAACCTTCACAATTGGCCAAACTGTGAAAAGGCCCTGGAACCATTCCCATCACCATGTGCTGAAAATGAAGCTCTCTAGTTGGACTCAGAGGCCGATGGCACACGCAAACCTGGAGCTTCTTTTAACACAACGGAtcaatcatgaaaaaaaaagacattgcaatagcatttattattgtaatggtTCGGTactataactttattttttgttatatactATTCAAGTTTACAAAAAAACTGTATCTTGGTAGGATGAGCAATGGttaacttatttttactttaaatagcTATTTATACAGAGGAATTTGTattctaaatgtaaatgtttagtaATTGTTTTGCTATGCAACCAgatatctttttttataaacactAACTGCAGaat

Function

GO: NA

KEGG:

id description
K01710 rfbB, rmlB, rffG; dTDP-glucose 4,6-dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89502 lncRNA downstream 758155 24155730 ~ 24156148 (-) True G71593
TU89500 lncRNA downstream 833556 24080548 ~ 24080747 (-) True G71591
TU89492 lncRNA downstream 1208437 23705566 ~ 23705866 (-) True G71583
TU89491 lncRNA downstream 1208883 23705199 ~ 23705420 (-) True G71582
TU89467 lncRNA downstream 1501319 23412616 ~ 23412984 (-) True G71561
TU89670 lncRNA upstream 560414 25488226 ~ 25490651 (-) True G71723
TU89673 lncRNA upstream 580785 25508597 ~ 25508870 (-) True G71726
TU89674 lncRNA upstream 603126 25530938 ~ 25533180 (-) True G71727
TU89693 lncRNA upstream 663006 25590818 ~ 25591551 (-) True G71740
TU89807 lncRNA upstream 1099723 26027535 ~ 26028500 (-) True G71835
AMCG00014639 mRNA downstream 4021 24900091 ~ 24910282 (-) True AMCG00014639
AMCG00014634 mRNA downstream 589661 23765078 ~ 24324642 (-) True AMCG00014634
AMCG00014633 mRNA downstream 1309572 23603609 ~ 23604731 (-) True AMCG00014633
AMCG00014631 mRNA downstream 2581493 22320028 ~ 22332810 (-) True AMCG00014631
AMCG00014630 mRNA downstream 2669388 22225925 ~ 22244915 (-) True AMCG00014630
AMCG00014641 mRNA upstream 33134 24960946 ~ 24961689 (-) True AMCG00014641
AMCG00014642 mRNA upstream 76693 25004505 ~ 25073710 (-) True AMCG00014642
AMCG00014645 mRNA upstream 202526 25130338 ~ 25143368 (-) True AMCG00014645
AMCG00014647 mRNA upstream 238134 25165946 ~ 25239586 (-) True AMCG00014647
AMCG00014650 mRNA upstream 470018 25397830 ~ 25398834 (-) True AMCG00014650
TU87063 other downstream 13251810 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 14116156 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 15597136 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 16530079 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 16755713 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 3401927 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 4461478 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 7335355 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 7669650 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 7669650 32597462 ~ 32619149 (-) False G73127

Expression Profile